BRIC-National Institute of Plant Genome Research

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BRIC-National Institute of Plant Genome Research

An Autonomous Institute of Biotechnology Research and Innovation Council
Deptartment of Biotechnology, Ministry of Science and Technology
Government of India

Sowing seeds for a better tomorrow

Dr. Jyothilakshmi Vadassery

Staff Scientist V
Lab 108

Profile

Research Interest

To understand the molecular mechanisms by which plants defend themselves against wide array of insect herbivores, and to use this knowledge in developing insect control strategies. We use forward and reverse genetics approach, biochemical techniques, metabolomics and imaging to expedite novel discoveries in plant defense against insect herbivory.

Key interests: Plant-Insect interactions, Chemical Ecology, Calcium Channels and Chemical Defense, Jasmonic Acid signaling, Metabolomics, Spodoptera, Piriformospora indica

Research Area

1) Mechanisms underlying rapid plant perception of insect attack: More than 1 million herbivorous insect species are known, and many lead to crop loss worldwide. Plants have evolved sophisticated defense mechanism to counteract insect attack very rapidly using calcium signals. The early events in plant perception of insect attack is largely unexplored and we have uncovered a major role for the calcium channel, Cyclic Nucleotide Gated Channels (CNGC19) in plant defense against herbivory (Meena et al., 2019, Plant Cell). We identified a key functional role for CNGC19 in plant defense against┬аS.┬аlitura, via Ca2+-mediated defense signaling that modulates phytohormones (jasmonates) and secondary metabolites (glucosinolates). We are further characterizing the role of additional CNGCs in herbivory induced plant immunity. Majority of plant defense upon lepidopteran insect feeding is co-ordinated by jasmonic acid (JA/JA-Ile) dependent signaling cascade. We also study the role of JA-Ile as a possible damage signal and novel players involved in its biosynthesis and perception in plants, using R-Geco based imaging and Aequorin based forward genetic screen.┬аWe further use metabolomics to identify the plant response to herbivory and how alterations in early signaling genes impact secondary metabolite production. ┬аWe have identified novel metabolites involved in the interaction of┬аSpodoptera┬аwith its host plants Tomato (Kundu et al., 2018, Planta) and Maize.

┬аKey to plant survival against voraciously feeding insects is quick local and systemic communication between cells. Plants possess a rapid systemic stress signaling system in the absence of a central nervous system, as in animals. We identified for the first time that upon insect herbivory, plants send systemic calcium signals to unwounded leaf (Kiep et al., 2015, New Phytologist). Changes in electrical signal, membrane potential, and Ca2+ result in systemic signaling upon herbivory. Molecular components involved in production local and systemic signals, the factor that moves from leaf to leaf and decoding mechanisms are our further areas of interest.

Mechanisms of plant-microbial symbiont recognition:

Mutualistic relationships between the plant roots and the microbes that inhabit the rhizosphere are crucial factor in plant survival as they aid in improving plant growth and overcome stress. The endophytic fungi,┬аPiriformospora indica┬аcolonizes the roots of many plant species including┬аArabidopsis┬аand promotes their growth, development and seed production. The fungus stimulates nutrient uptake and confers resistance to various biotic and abiotic stresses. Using┬аplant growth promoting fungus,┬аPiriformopsora indica┬аand its host,┬аArabidopsis thaliana┬аwe intend to understand the molecular mechanisms by which symbiotic fungi in roots provide growth advantage to whole plants (Jogawat et al., 2020,┬аJExB, Kundu et al., Plant Physiology, 2022) and utilize the knowledge to develop novel strategies to improve crop yields.

Academic Background

Staff Scientist V (2022-present) :┬аNational Institute for Plant Genome Research (NIPGR)

Staff Scientist IV (2018-2021) :┬аNational Institute for Plant Genome Research (NIPGR)

Staff Scientist III (2014-2018) :┬аNational Institute for Plant Genome Research (NIPGR)

Post Doctoral Fellow (2010-2014) :┬аMax Planck Institute for Chemical Ecology, Germany

Post Doctoral Associate┬а(2009-2010) :┬аCornell University,┬аUSA

Ph. D. (2006-2009) :┬аFriedrich Schiller University, Jena, Germany

M. Sc. (2003-2005) :┬аIndian Agricultural Research Institute, Delhi

B. Sc. (1998-2002) :┬аKerala Agricultural University, Padannakkad

Awards & Honors

Awards & Fellowships

Elected Member, Guha Research Conference (2024)

Fellow, The National Academy of Sciences (NASI), India (2024)

Janaki Ammal - National Women Bioscientists Award, 2022 (Department of Biotechnology)

Fellow of National Academy of Sciences (FNASc), Allahabad, India

NASI- SCOPUS Young Scientist Award in Plant Science/Agriculture, 2022

Head, Max Planck-India Partner Group in Chemical Ecology (2015-2021)

EMBO Global Investigator (2020-2024)

Wilhelm-Pfeffer-Stiftung prize, German Botanical Society, awarded for best paper in 2010

Max Planck Society Postdoctoral Fellowship

DAAD (German Academic Exchange Service) Postdoctoral Fellowship

Ph. D. with "summa cum laude", Friedrich Schiller University, Germany

Fellowship of International Max Planck Research School (IMPRS) for Ph. D.

Junior Research Fellowship (JRF), Indian Council for Agricultural Research (ICAR)

Current Members

Dr. D. Balasubramaniam

Postdoc

Dr. Balu obtained his PhD from MKU, Madurai.

He has done his postdoctoral studies in UC-LA, USA and University of Regensburg, Germany.

He is currently working on the structure determination of membrane proteins involved in calcium signalling.

Dr. Abhimanyu Jogawat

Postdoc

Abhimanyu did PhD from JNU, Delhi, and worked in our lab as SERB-NPDF fellow.

Currently he is a M.K. Bhan Fellow and works on the intersection of sugar and calcium signaling in Piriformospora indica Arabidopsis symbiotic interaction in plant roots

Dr. Sameer Dixit

Postdoc

Sameer completed his Ph.D. from CSIR-NBRI, Lucknow, and Postdoctoral research from Western University, Canada.

He joined the lab as M.K. Bhan fellow and works on RNAi-based screening, identification, and functional characterization of effector proteins in Spodoptera litura.

Mr. Vinod Kumar Prajapati

Postdoc

Paramita did her doctoral thesis from IIT, Kharagpur.

Her major interest is primarily in the field of plant secondary metabolites. She works on host plant resistance in Maize against Fall Armyworm (Spodoptera frugiperda) and plant defense metabolomics involved in the interaction.

Dr. Gopal Banerjee

Ph. D. Student

Mr. Vinod Kumar Prajapati obtained his M.Sc. in Molecular Biology and Biotechnology from Tezpur University, Assam.

He is a PhD student working on identification of effector proteins secreted by Spodoptera litura and their role in plant defense manipulation.

Ms. Sarvesh Jonwal

Ph.D. Student

Shruti did her masters from University of Hyderabad.

Shruti does a forward genetics screen in aequorin background using bioactive hormone, JA-Ile as stimuli and identifies novel pathways involved in calcium mediated perception of jasmonates.

Athira Mohandas Nair

Ph. D. Student

Athira did her M.Sc from University of Mysore, Karnataka. She is currently working on unraveling the molecular mechanisms of early signaling in Arabidopsis upon perception of the root endosymbiont Piriformospora indica.

She is also hunting for P. indica effector (PiE) candidates that are critical of the establishment of this endosymbiosis.

Ms. Misha Kumari

Ph.D. Student

Misha did her MSc in Delhi University.

Currently she works on early signaling upon Spodoptera herbivory and higher order mutants of CNGCs for their role in herbivore defense.

Vishakh Vijayan

Ph.D. Student

Vishakh did his M.Sc from Mahatma Gandhi University, Kerala.

He works on characterizing the plant defense altering effector proteins from the insect pest Spodoptera litura

Amrutha Laie

Ph.D. Student

Amrutha did her M.Sc from Mahatma Gandhi University, Kerala.

Currently, she works on identification and characterization of genes involved in calcium mediated JA signaling.

Lab Alumni

Dr. Anish Kundu

Postdoc
Anish did his PhD from IIT, Kharagpur and a postdoctoral study at University of Saskatchewan, Canada.
He is currently working on metabolomics and biochemical defense responses of plant during plant-insect interactions.

Mr. Ramgopal Prajapati

Postdoc
Ram obtained his MSc from University of Lucknow and PhD from NIPGR.
He works on a novel Cyclic Nucleotide Gated Channel (CNGC) and its role in early signaling events upon┬аSpodoptera litura┬аattack.

Dr. Mukesh Kumar Meena

Mukesh was a postdoctoral fellow in our lab (2015-2018), He further joined as Marie Sklodowska-Curie postdoctoral fellow at Leibniz Institute of Plant Biochemistry (IPB), Halle, Germany. Currently he is a Scientist II at NIPGR

Dr. Pritha Kundu

Pritha is currently a postdoctoral Fellow at Dept. of Entomology, University of Nebraska Lincoln, USA

Dr. Janesh Gautam

Janesh was a postdoctoral fellow in the lab (SERB-NPDF). Currently he is a Scientist at ICMRтАЛ

Ms. Deepika Mittal

Deepika did her PhD in the lab. Currently she is a Review Editor at JoVe (The Journal of Visualized Experimentation)тАЛ

Ms. Deepthi Krishna D.

JRF
Deepti did her MSc from IISER, Mohali and was a Junior Research Fellow on Max Planck-India partner group project and has worked on CNGC19.

Vishmita Sethi

JRF
Mahendra is a bioinformatician and worked as JRF in our lab on the silico identification of effector proteins in Spodoptera using NGS.
Presently, he is pursuing his PhD at Max Planck Institute for Chemical Ecology, Germany as IMPRS student.

Ms. Riya Roon

JRF
Riya did her MSc from TERI University and worked on generating mutants in background of calcium reporters. Presently, she is pursuing his PhD at NABI, Mohali

Former Trainees

  • Ms. Aruna Boro, St. Anthony College, Shillong
  • Mr. Sidhant S Shetty, IISER Bhopal
  • Mr. Sathyaseelan. P TNAU, Coimbatore
  • Ms. Bhawana. M, IISER, Pune
  • Mr. Appus. M.V, MACFAST Tiruvalla
  • Ms. Sayali Gosavi, Pune University

Collaborations

  • Dr. Wilhelm Boland, Dr.Axel Mith├╢fer┬а(Max Planck Institute for Chemical Ecology, Germany)
  • Dr. Ralf Oelm├╝ller (Institute of General Botany and Plant
  • Physiology, FSU Jena, Germany)
  • Dr. Edgar Pieter (University of Halle-Wittenberg, Germany)
  • Dr. Arockiasamy┬аArulandu (ICGEB, Delhi)
  • Dr. J.C Sekhar (Indian Institute of Maize Research, Delhi)
  • Dr. Smrutisanchita Behra (IICT, Kolkata)

Publications

From NIPGR

Jogawat, A., Sanyasi, M., Menon, S. H., Goyal, D., Nair, A. M., & Vadassery, J. (2026). Arabidopsis SWEET12 contributes to the regulation of sugar allocation and Defense responses during interaction with Serendipita indica.┬аPlant & Cell Physiology, pcag032

Kundu P, Kumari M, Meena M.K, Mishra S and┬аVadassery J┬а(2025) The Arabidopsis eATP receptor, DORN1 and CNGC19 channel act in tandem to regulate plant defense upon Spodoptera litura herbivory,┬аJournal of Experimental Botany, eraf025,https://doi.org/10.1093/jxb/eraf025

Kulkarni, M.,┬аVadassery, J. & Borges, R.M (2025) Host Manipulations Within Mutualisms: Role of Plant Hormones in Selective Resource Allocation.┬аJournal of Chemical Ecology, 51: 8┬аhttps://doi.org/10.1007/s10886-025-01573-7

Bera P, Suby SB, Dixit S, Vijayan V, Kumar N, Sekhar JC,┬аVadassery J┬а(2025) Identification of novel target genes for RNAi mediated management of the pest, Fall Armyworm (Spodoptera frugiperda, J. E. Smith).┬аCrop Protection,187: 106972

Kundu A, Bera P, Mishra S,┬аVadassery J┬а(2025) Deep metabolomics revealed trajectories of jasmonate signaling-mediated primary metabolism in Arabidopsis upon Spodoptera litura herbivory.┬аPhysiologia Plantarum,https://doi.org/10.1111/ppl.70035

Prajapati VK, Vijayan V,┬аVadassery J┬а(2024) Secret Weapon of Insects: The Oral Secretion Cocktail and Its Modulation of Host Immunity.┬аPlant and Cell Physiology, 65(8): 1213-1223

Gandhi A, Reichelt M, Goyal D,┬аVadassery J, Oelmuller R (2024) Trichoderma harzianum Protects the Arabidopsis Salt Overly Sensitive 1 Mutant Against Salt Stress.┬аJournal of Plant Growth Regulation,https://doi.org/10.1007/s00344-024-11474-w

Mittal, D., Gautam, J. K., Varma, M., Laie, A., Mishra, S., Behera, S., &┬аVadassery, J.┬а(2024). External jasmonic acid isoleucine mediates amplification of plant elicitor peptide receptor (PEPR) and jasmonate-based immune signalling.┬аPlant, Cell & Environment,┬а10.1111/pce.14812

Majumdar, S., Kaur, H., Rinella, M.J., Kundu, A., Vadassery, J., Erbilgin, N., Callaway, R., Cadotte, M., Inderjit (2023) Synergistic effects of canopy chemistry and autogenic soil biota on a global invader.┬аJournal of Ecology, 00:1-17, 10.1111/1365-2745.14113

Fatima, U., Balasubramaniam, D., Khan, W. A., Kandpal, M., Vadassery, J., Arockiasamy, A., & Senthil-Kumar, M. (2023). AtSWEET11 and AtSWEET12 transporters function in tandem to modulate sugar flux in plants. Plant Direct, 7(3), e481.https://doi.org/10.1002/pld3.481

Soujanya PL, Sekhar JC, Yathish KR, Karjagi CG, Rao KS, Suby SB, Jat SL, Kumar B, Kumar K,┬аVadassery J, Subaharan K, Patil J, Kalia VK, Dhandapani A and Rakshit S (2022) Leaf Damage Based Phenotyping Technique and Its Validation Against Fall Armyworm,┬аSpodoptera frugiperda┬а(J. E. Smith), in Maize. Frontiers in Plant Science, 13:906207. doi: 10.3389/fpls.2022.906207

Kundu A, Mishra S, Kundu P, Jogawat A,┬аVadassery J┬а(2021) Piriformospora indica employs hosts putrescine for growth promotion in plants.┬аPlant Physiology,doi.org/10.1093/plphys/kiab536

Kundu P and┬аVadassery J┬а(2021) Role of WRKY transcription factors in plant defense against lepidopteran insect herbivores: An Overview.┬аJournal of Plant Biochemistry and Biotechnology,doi.org/10.1007/s13562-021-00730-9

Jogawat A, Meena MK, Kundu A, Varma M,┬аVadassery┬аJ┬а(2020)┬аCalcium channel CNGC19 mediates basal defense signaling to balance colonization of Piriformospora indica on Arabidopsis roots.┬аJournal of Experimental Botany,┬аpii: eraa028.

Prajapati, V.K., Verma, M.,┬аVadassery, J┬а(2020)┬аIn silico┬аidentification of effector proteins from generalist herbivore,┬аSpodoptera litura.┬аBMC Genomics┬а21, 819.

Mittal D, Mishra S, Prajapati R,┬аVadassery J┬а(2020) Forward Genetic Screen Using Transgenic Calcium Reporter Aequorin to Identify Novel Targets in Calcium Signaling.┬аJournal of Visualized Experiments (JoVe), e61259,┬аdoi:10.3791/61259

Prajapati, R., Mittal, D., Meena, M.,┬аVadassery, J┬а(2020) Jasmonic acid (JA) induced-calcium elevation in Arabidopsis is highly variable due to time of day and conversion to JA-Ile.┬аJournal of Plant Biochemistry and Biotechnology.┬а29,┬а816тАУ823┬а

Suby P, Soujanya L, Yadava P, Patil J, Subaharan K, Prasad S, Babu S, Jat SL, Yathish K,┬аVadassery J, Kalia V, Bakthavatsalam N, Shekhar JC and Rakshit S (2020) Invasion of fall armyworm (Spodoptera frugiperda) in India: nature, distribution, management and potential impact.┬аCurrent Science┬а119 (1): 44-51

Meena MK, Prajapati R, Krishna D, Divakaran K, Pandey Y, Reichelt M, Mathew MK, Boland W, Mith├╢fer A and┬аVadassery J (2019) The Ca2+ channel CNGC19 regulates Arabidopsis defense against spodoptera herbivory.┬аPlant Cell,┬а31: 1539-1562.┬а

Kundu, A., Mishra, S. & Vadassery, J (2018).Spodoptera litura-mediated chemical defense is differentially modulated in older and younger systemic leaves of┬аSolanum┬аlycopersicum.┬а┬аPlanta┬аdoi: 10.1007/s00425-018-2953-3.

Kundu A,┬аVadassery J┬а(2018) Chlorogenic acid-mediated chemical defense of plants against insect herbivores.┬аPlant Biology┬а(Stuttg).┬а┬аdoi: 10.1111/plb.12947.

Vadassery J, Ballhorn DJ, Fleming SR, Mazars C, Pandey SP, Schmidt A, Schuman MC, Yeh K-W, Yilamuiang A, Mith├╢fer A (2018). Neomycin: an effective inhibitor of jasmonate-induced reactions in plants.┬аJournal of Plant Growth Regulation. 38: 713тАУ722

Jogawat A,┬аVadassery J, Verma N, Oelm├╝ller R, Dua M, Nevo E, Johri AK (2016) PiHOG1, a stress regulator MAP kinase from the root endophyte fungus┬аPiriformospora indica, confers salinity stress tolerance in rice plants.┬аSci. Rep. 6,┬а36765; doi: 10.1038/ srep36765.

Kiep , V.,┬аVadassery, J., Lattke, J., Maa├Я, JP., Pieter. E., Boland, W., Mith├╢fer, A. (2015). Systemic cytosolic Ca2+ elevation is activated upon wounding and herbivory in Arabidopsis. ┬аNew Phytologist207(4):996-1004. (corresponding author)

Meena, MK.,┬аVadassery, J.┬а(2015).┬аChannels hold the key: cyclic nucleotide gated channels (CNGC) in plant biotic stress signaling.┬аEndocytobiosis & Cell Research┬а26: 25-30.

Previous work

Jimenez-Aleman GH, Almeida-Trapp M, Fern├бndez-Barbero G, Gimenez-Ibanez S, Reichelt M,┬аVadassery J, Mith├╢fer A, Caballero J, Boland W, Solano R┬а(2019)┬аOmega hydroxylated JA-Ile is an endogenous bioactive jasmonate that signals through the canonical jasmonate signaling pathway.┬аBiochimica et Biophysica Acta┬а(BBA) –┬аMolecular and Cell Biology of Lipids.┬а1864(12):158520

Jisha, V.,┬аVadassery, J*, Mith├╢fer, A., Lavanya, D., Saivishnupriya., Ramanan, R. (2015) Overexpression of an AP2/ERF type transcription factor OsEREBP1 confers biotic and abiotic stress tolerance in rice.┬аPLoS One,┬а10(6):e0127831

Scholz, S. S., Reichelt, M.,┬аVadassery, J.,┬аMith├╢fer, A. (2015). Calmodulin-like protein CML37 is a positive regulator of ABA during drought stress in Arabidopsis.┬аPlant Signaling and Behaviour┬а,┬а10(6):e1011951

Ranjan, A.,┬аVadassery, J., Patel, H.K., Pandey, A., Palaparthi, R., Mith├╢fer, A., Sonti, V.R (2014) Upregulation of jasmonate biosynthesis and jasmonate-responsive genes in rice leaves in response to a bacterial pathogen mimic.┬а Functional and Integrative Genomics Journal, 15(3):363-73

Vadassery, J┬а*.,┬аReichelt, M., Jimenez-Aleman, G. H., Boland, W., Mith├╢fer, A. (2014). Neomycin inhibition of (+)-7-iso-jasmonoyl-L-isoleucine accumulation and signaling. Journal of Chemical Ecology. 40(7):676-86. (CoтИТcorresponding author)

Michal Johnson, J., Reichelt, M.,┬аVadassery, J.,┬аGershenzon, J., Oelm├╝ller, R. (2014). An┬аArabidopsis┬аmutant impaired in intracellular calcium elevation is sensitive to biotic and abiotic stress.┬аBMC Plant Biology┬а14:162

Scholz, S.,┬аVadassery, J┬а., Heyer, M., Reichelt, M ., Bender, K., Snedden, W., Boland, W., Mith├╢fer,A . (2014) Mutation of the┬аArabidopsis┬аCalmodulin-like protein CML37 deregulates the jasmonate pathway and enhances susceptibility to herbivory.┬аMolecular Plant. 7(12):1712-26

Vadassery, J┬а.,Reichelt, M ., Hause, B., Gerzhenzon, J., Boland, W., Mith├╢fer,A . (2012) CML42 mediated calcium signaling regulates plant defense against Spodoptera herbivory and multiple stress in Arabidopsis.┬аPlant Physiology,┬а 159: 1159-1175┬а

Vadassery, J., Reichelt,M., Boland, W., Mith├╢fer,A. (2012) Direct proof of ingested food regurgitation by┬аSpodoptera littoralis┬аcaterpillars during feeding on plants.┬аJournal of Chemical Ecology,┬а38: 865-872┬а

Vadassery, J., Scholz, S. S., Mith├╢fer, A.┬а(2012) Multiple calmodulin-like proteins in┬аArabidopsisare induced by insect-derived (Spodoptera littoralis) oral secretion.┬аPlant Signaling and Behaviour.┬а7 (10):1277-80

Yilamujiang, A.,┬аVadassery, J., Boland, W., Mith├╢fer, A. (2012). Calmodulin-like proteins, CMLs: New players in plant defense regulation?┬аEndocytobiosis & Cell Research, 22, 66-69┬а

Camehl, I.,┬аDrzewiecki, C.,┬аVadassery, J.,┬аShahollari, B., S., Sherameti, I., Munnik, T., Hirt, H., Oelm├╝ller, R. (2011) The OXI1 Kinase Pathway Mediates Piriformospora indica-Induced Growth Promotion in Arabidopsis.┬аPLoS Pathogens, 7(5): e1002051. doi:10.1371┬а

Vadassery, J.,┬аRanf, S., Drzewiecki, C., Mith├╢fer, A., Mazars, C., Scheel, D., Lee, J., Oelm├╝ller, R. (2009). A cell wall extract from the endophytic fungus┬аPiriformospora indica┬аpromotes growth of┬аArabidopsis┬аseedlings and induces intracellular calcium elevation in roots.┬аThe Plant Journal.┬а59(2):193-206┬а

Vadassery, J┬аand Olemuller, R (2009).Calcium signaling in pathogenic and beneficial plant microbe interactions: What we can learn from┬аPiriformospora indica┬аand┬аArabidopsis thaliana.┬аPlant Signalling and Behaviour┬а4(11), 1-4.┬а

Vadassery, J.,┬аTripathi, S., Prasad, R., Verma, A., Oelm├╝ller, R. (2009). Ascorbate, monodehydroascorbate reductase3 and 2 are crucial for the mutualistic interaction between┬аPiriformospora indica┬аand┬аArabidopsis.┬аJ Plant Physiol. 166(12):1263-74┬а

Vadassery, J.,┬аRitter, C., Venus, Y., Camehl, I., Varma, A., Shahollari, B., Nov├бk, O., Strnad, M., Ludwig-M├╝ller, J., Oelm├╝ller, R.┬а(2008). The role of auxins and cytokinins in the mutualistic interaction between the┬аArabidopsis and Piriformospora indica. Mol. Plant Microb. Interact.┬а21(10), 1371-83.┬а┬а

Jyothilakshmi, V., Singh, A., Gaikwad, K., Vinod, K., Singh, N .K. and S.M.S.Tomar. (2008) RNA editing in CMS wheat: Influence of nuclear background leads to differential editing on┬аorf256.┬аIndian J. Genet., 68(4), 353-359.

Shahollari, B.,┬аVadassery, J┬а., Varma,┬а A., Oelm├╝ller, R . (2007). A leucine-rich repeat protein is required for growth promotion and enhanced seed production mediated by the endophytic fungus┬аPiriformospora indica┬аin┬аArabidopsis thaliana.┬аThe Plant Journal┬а50(1), 1-13.┬а

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