Dr. Swarup K. Parida
Scientist V, FNA, FNASc, FNAAS
Ph.D. (Biotechnology), Jamia Hamdard University & National Institute for Plant
Biotechnology (NIPB), New Delhi, Post Doctoral Fellow, NIPB, New Delh
- No.: 91-11-26741612, 14, 17 (Ext. 228), Direct: 91-11-26735228 Fax: 91-11-26741658
- swarup@nipgr.ac.in, swarupdbt@gmail.com
Profile
Research Area
Genomics-assisted Breeding for Crop Improvement, Molecular Genetics, Plant Genomics, Agricultural Biotechnology
Research Program
Next-generation molecular breeding for accelerated genetic improvement of major cereal and pulse food crops, rice and chickpea.
Next-generation sequencing (NGS)-driven integrated genomics-assisted breeding strategy for rapid delineation of novel superior genes and natural alleles modulating traits of agronomic importance in order to accelerated efficient genetic dissection of complex quantitative abiotic stress tolerance as well as yield, plant architectural and nutritional quality traits for genetic improvement of rice and chickpea.
Marker (haplotype)-assisted breeding to develop early-flowering/maturing, climate-resilient, nutritionally-enriched, semi-dwarf and erect chickpea varieties with enhanced yield and productivity that are amenable to mechanical harvesting.
National Mission Mode Program on “Germplasm Characterization for Trait Discovery (DBT-Chickpea Mission Project)”: Comprehensive phenotypic and genotypic characterization of germplasm resources conserved at ICRISAT and NBPGR Genebanks (Pan-Genebank Core) to identify novel superior genes/alleles governing traits of agronomic importance and promising trait-specific accessions (donors) for accelerating genomics-assisted crop improvement of chickpea.
Development of novel concepts, user-friendly databases, web-servers and cost-effective informative Arrays on various genetic markers designing and diverse integrated genomics-assisted breeding strategies for rapid quantitative dissection of complex seed yield and seed quality component traits aimed towards genetic enhancement of rice and chickpea.
Career
Scientist V, National Institute of Plant Genome Research (NIPGR), New Delhi (2022 onwards)
Scientist IV, National Institute of Plant Genome Research (NIPGR), New Delhi (2018-21)
Scientist III, National Institute of Plant Genome Research (NIPGR), New Delhi (2014-18)
Scientist II, National Institute of Plant Genome Research (NIPGR), New Delhi (2011-14)
Post Doctoral Fellow, NIPB, New Delhi (2010-11)
Ph.D. (Biotechnology), Jamia Hamdard University & NIPB, New Delhi (2006-10)
M.Sc. (Agricultural Biotechnology), Indira Gandhi Agricultural University (IGAU), Raipur, Chhattisgarh (2001-03)
B.Sc. (Agriculture), Odisha University of Agriculture and Technology (OUAT), Bhubaneswar, Odisha (1997-2001)
Honors and Fellowships
Year
Honors and Fellowships
2022
Fellow (FNA) of Indian National Science Academy (INSA)
2018
Fellow (FNASc) of National Academy of Sciences India (NASI)
2019
Fellow (FNAAS) of National Academy of Agricultural Sciences (NAAS)
2018
Member of Crop Science Society of America
2019
Member of Genetics Society of UK & USA
Awards & Recognition
Working Group Committee Member of NAAS-YUVA (Youth United for Visionary Agriculture)
Department of Biotechnology (DBT) S. Ramachandran-National Bioscience Award for Career Development - 2020
Best Oral Presentation Award in Young Scientist Conference, under the Theme-Self-Reliant India, Session: Life Sciences in the Sixth edition of 'India International Science Festival (IISF-2020)', December 22-25, 2020.
NASI Reliance Industries Platinum Jubilee Award in Biological Sciences - 2019
NAAS Associate Fellow - 2018
ISCA Pran Vohra Award in Agricultural Sciences - 2018
Odisha Bigyan Academy Samanta Chandra Sekhar Award in Science & Technology - 2018
Indian Academy of Science Associate Fellow - 2018
NASI Prof. B.K. Bachhawat Memorial Young Scientist Lecture Award - 2018
IARI Dr. P.N. Bahl Award-IV for the Biennium 2018-19
NASI Scopus Young Scientist Award - 2015
Indian Genetics Congress (IGC) Researcher Award - 2015
Odisha Bigyan Academy Young Scientist Award in 'Science & Technology'- 2014
NAAS Young Scientist Award - 2013
NASI Young Scientist Award - 2011
ISCA Young Scientist Award - 2011
Indian Council of Agricultural Research (ICAR) Jawaharlal Nehru Award in Plant Biotechnology - 2011
INSA Young Scientist Award - 2010
National Eligibility Test (NET) & Graduate Aptitude Test in Engineering (GATE) in Life Sciences
Board of Research in Nuclear Sciences (BRNS) - Human Resource Development (HRD), Govt. of India Fellowship
All India Combined Biotechnology Entrance Examination (CEEB) M.Sc. (Agricultural Biotechnology) Merit Scholarship
OUAT Merit Scholarship
Life Member of Indian Society for Plant Biochemistry and Biotechnology
National Rural Talent Search (NRTS) Merit Scholarship
Life Member of Indian Science Congress Association (ISCA)
Life Member of Indian Society of Genetics and Plant Breeding
Special Attainments
Associate/Handling Editors┬аof Scientific Reports (Nature Publishing Group), BMC Genomics, BMC Plant Biology, PLOS ONE, Frontiers in Plant Science, Plant Molecular Biology Reporter, Molecular Breeding, Journal of Plant Biochemistry and Biotechnology, Journal of Plant Genomics, Journal of Genetics and Genomic Research & Express Biology
Associate Topic Editor┬аof Scientific Reports for A Special issue on Research Topic “Seed Biology” (2022-23)
Associate Topic Editor┬аof PLOS ONE for A Special issue on Research Topic “Future Crops” (2019-20)
Associate Topic Editor┬аof Frontiers in Plant Sciences for A Special issue on Research Topic “Plant Translational Research in Genomics Era” (2016-17)
Member of ICAR for Developing National DNA Fingerprinting Protocols of Rice and Chickpea
Mentor and Expert Member in Department of Science and Technology (DST) INSPIRE (Innovation in science Pursuit for Inspired Research) Program
Current Members
Mr. Anurag Daware
Ph. D student
M. Sc. (Ag)., Molecular Biology & Biotechnology, GB Pant University, Pantnagar
- avd.anurag@gmail.com
Ms. Laxmi Narnoliya
Ph. D student
M. Sc., Botany, Delhi University (North campus)
- nicelaxmi2010@gmail.com
Mr. Virevol Thakaro
Ph. D student
M.Sc. Biotechnology, Garden City College, Bangalore Univesity, Bengaluru
- virevolthakro@gmail.com
Ms. Udita Basu
Ph. D student
M.Sc. Botany, University of Calcutta, Calcutta
- basu.udita@gmail.com
Mr. Jitendra Kumar Mohanty
Ph. D student
M.Sc. (Ag.) Molecular Biology & Biotechnology, GB Pant University, Pantnagar
- jkm.mbge@gmail.com
Dr. Naveen Malik
Research Associate III
M.Tech. Bioinformatics, Jamia Hamdard University, New Delhi
Mr. Rishi Srivastava
Senior Research Fellow
M.Tech., Bioinformatics, Jamia Hamdard University
- rishi43210@gmail.com
Mr. Deepak Bajaj
Senior Research Fellow
M.Sc., Biotechnology, Jaipur National University
- deepak_bajaj19@yahoo.ie
Ms. Nidhi Varshney
Project Associate I
M.Sc. Biotechnology, IMS University Courses Campus, Ghaziabad
- varshneyn123@gmail.com
Mr. Kuldeep Rana
Lab Attendant
- kuldeeprana1947@gmail.com
Former Lab Members
Dr. Maneesha S. Saxena
Research Associate
- maneesbiochem@gmail.com
Ms. Tanima Shree
Senior Research Fellow
- tanima.shree89@gmail.com
Dr. Saurabh Badoni
Research Associate
- saurabhbadoni86@gmail.com
Ms. Alice Kujur
Ph. D student
- alice13.kujur@gmail.com
Mr. Shouvik Das
Ph. D studentтАЛ
- shouvik@nipgr.ac.in
Mr. Akash Sharma
Senior Research Fellow
- ak93sharma@gmail.com
Publications
Corresponding Author
Thakro V, Varshney N, Malik N, Daware A, Srivastava R, Mohanty JK, Basu U, Narnoliya L, Jha UC, Tripathi S, Tyagi AK,┬аParida SK┬а(2024) Functional allele of a┬аMATE┬аgene selected during domestication modulates seed color in chickpea.┬аThe Plant Journal┬а117:53-71.
Malik N, Basu U, Srivastava R, Daware A, Ranjan R, Sharma A, Thakro V, Mohanty JK, Jha U, Tripathi S, Tyagi AK,┬аParida SK┬а(2024) Natural alleles of Mediator subunit genes modulate plant height in chickpea.┬аThe Plant Journal┬а116:1271-1292.
Mohanty JK, Yadav A, Narnoliya L, Thakro V, Nayyar H, Dixit GP, Jha UC, Vara Prasad PV, Agarwal P,┬аParida SK┬а(2024) A Next-Generation Combinatorial Genomic Strategy Scans Genomic Loci Governing Heat Stress Tolerance in Chickpea.┬аPlant Cell Environment DOI: 10.1111/pce.15186.
Daware A, Mohanty JK, Narnoliya L, Singh A, Rathore D, Thakro V, Francis A, Singh NP, Francis P, Tripathi S, Chattopadhyay D,┬аParida SK┬а(2024) Uncovering DNA methylation landscapes to decipher evolutionary footprints of phenotypic diversity in chickpea.┬аDNA Research┬а31(3):dsae013
Mohanty JK, Thakro V, Yadav A, Nayyar H, Dixit GP, Agarwal P,┬аParida SK, Jha UC (2024) Delineation of genes for a major QTL governing heat stress tolerance in chickpea.┬аPlant Molecular Biology┬а114:19.
Mohanty JK, Jha UC, Dixit GP, Bharadwaj C,┬аParida SK┬а(2023) eQTL-seq: a rapid genome-wide integrative genetical genomics strategy to dissect complex regulatory architecture of gene expression underlying quantitative trait variation in crop plants.┬аPlant Molecular Biology Reporter┬а42 (2), 218-223.
Francis A, Singh NP, Singh M, Sharma P, Gayacharan, Kumar D, Basu U, Bajaj D, Varshney N, Joshi DC, Semwal DP, Tyagi V, Wankhede D, Bharadwaj R, Singh AK,┬аParida SK, Chattopadhyay D. (2023) The ricebean genome provides insight into Vigna genome evolution and facilitates genetic enhancement.┬аPlant Biotechnology Journal┬а21:1522-1524.
Basu U and┬аParida SK┬а(2023) The developmental dynamics in cool season legumes with focus on chickpea.┬аPlant Molecular Biology┬а111:473-491.
Thakro V, Malik N, Basu U, Srivastava R, Narnoliya L, Daware A, Varshney N, Mohanty JK, Bajaj D, Dwivedi V, Tripathi S, Jha UC, Dixit GP, Singh AK, Tyagi AK, Upadhyaya HD,┬аParida SK┬а(2023) A superior gene allele involved in abscisic acid signaling enhances drought tolerance and yield in chickpea.┬аPlant Physiology┬а191:1884-1912.
Basu U, Hegde VS, Daware A and┬аParida SK┬а(2022) Transcriptome landscape of early inflorescence developmental stages identifies key flowering time regulators in chickpea.┬аPlant Molecular Biology┬а108:565-583.
Jha UC, Chaturvedi SK, Singh NP, Srivastava A, Mondal B, Kumar Y, Tripathi S, Paul PJ, Nayyar H, Thakro V, Jha R and┬аParida SK┬а(2022) Elucidating genetic diversity and association mapping to identify SSR markers linked to 100 seed weight in chickpea (Cicer arietinum L.).┬аIndian Journal of Genetics and Plant Breeding┬а82:193-199.
Mohanty JK, Jha UC, Dixit GP,┬аParida SK┬а(2022) Harnessing the hidden allelic diversity of wild Cicer to accelerate genomics-assisted chickpea crop improvement.┬аMolecular Biology Reporter┬а49:5697-5715.
Daware A, Malik A, Srivastava R, Das D, Ellur RK, Singh AK, Tyagi AK,┬аParida SK┬а(2022) Rice Pan-genome Array (RPGA): an efficient genotyping solution for pan-genome-based accelerated crop improvement in rice.┬аThe Plant Journal┬а113:26-46.
Basu U, Sharma A, Bajaj D, Malik N, Jha UC, Upadhyaya HD,┬аParida SK┬а(2021) The DNA replication, repair, and recombination pathway genes modulating yield and stress tolerance traits in chickpea.┬аPlant Molecular Biology Reporter┬а4: 119-135.
Basu U and┬аParida SK┬а(2021) Restructuring plant types for developing tailor-made crops.┬аPlant Biotechnology Journal┬а21:1106-1122.
Basu U, Sharma A, Bajaj D, Malik N, Jha UC, Upadhyaya HD and┬аParida SK┬а(2021) The DNA Replication, Repair, and Recombination Pathway Genes Modulating Yield and Stress Tolerance Traits in Chickpea.┬аPlant Molecular Biology Reporter┬а40:119-135.
Narnoliya L, Basu U, Bajaj D, Malik N, Thakro V, Daware A, Sharma A, Tripathi┬а S, Hegde VS, Upadhyaya HD, Singh AK, Tyagi AK,┬аParida SK┬а(2019) Transcriptional signatures modulating shoot apical meristem morphometric and plant architectural┬а traits enhance yield and productivity in chickpea.┬аPlant Journal┬а98:864-883.
Basu U, Upadhyaya HD, Srivastava R, Daware A, Malik N, Sharma A, Bajaj D, Narnoliya L, Thakro V, Kujur A, Tripathi S, Bharadwaj C, Hegde VS, Pandey AK, Singh AK, Tyagi AK,┬аParida SK┬а(2019) ABC transporter-mediated transport of glutathione conjugates enhances seed yield and quality in chickpea.┬аPlant Physiology┬а180:253-275.
Basu U, Narnoliya L, Srivastava R, Sharma A, Bajaj D, Daware A, Thakro V, Malik N, Upadhyaya HD, Tripathi S, Hegde VS, Tyagi AK,┬аParida SK┬а(2019) CLAVATA signaling pathway genes modulating flowering time and flower number in chickpea.┬аTheoretical and Applied Genetics┬а132:2017-2038.
Basu U, Bajaj D, Sharma A, Malik N, Daware A, Narnoliya L, Thakro V, Upadhyaya HD, Kumar R, Tripathi S, Bharadwaj C, Tyagi AK,┬аParida SK┬а(2019) Genetic dissection of photosynthetic efficiency traits for enhancing seed yield in chickpea.┬аPlant, Cell & Environment┬а42:158-173.
Sharma A, Basu U, Malik N, Daware A, Thakro V, Narnoliya L, Bajaj D, Tripathi S, Hegde VS, Upadhyaya HD, Singh AK, Tyagi AK,┬аParida SK┬а(2019) Genome-wide cis-regulatory signatures for modulation of agronomic traits as exemplified by drought yield index (DYI) in chickpea.┬аFunctional Integrative Genomics┬аDOI:10.1007/s10142-019-00691-2.
Basu U, Srivastava R, Bajaj D, Thakro V, Daware A, Malik N, Upadhyaya HD,┬аParida SK┬а(2018) Genome-wide generation and genotyping of informative SNPs to scan molecular signatures for seed yield in chickpea.┬аScientific Reports┬а8:13240.
Dwivedi V,┬аParida SK, Chattopadhyay D (2017) A repeat length variation in myo-inositol monophosphate gene contributes to seed size trait in chickpea.┬аScientific Reports┬а7:4764.
Srivastava R, Upadhyaya HD, Kumar R, Daware A, Basu U, Shimray PW, Tripathi S,Bharadwaj C, Tyagi AK,┬аParida SK┬а(2017) A Multiple QTL-Seq strategy delineates potential genomic loci governing flowering time in chickpea.┬аFrontiers in Plant Science┬а8:1105.
Upadhyaya HD, Bajaj D, Tripathi S, Bharadwaj C, Tyagi AK,┬аParida SK┬а(2017) Genetic dissection of plant growth habit in chickpea.┬аFunctional & Integrative Genomics┬а17:711-723.
Parida SK, Srivastava R, Bajaj D (2017) A genome-wide mQTL-seq scan identifies potential molecular signatures regulating plant height in chickpea.┬аPlant Molecular Biology┬аReporter┬а35:273-286.
Shimray PW, Bajaj D, Srivastava R, Daware A, Upadhyaya HD, Kumar R, Bharadwaj C, Tyagi AK,┬аParida SK┬а(2017) Identifying transcription factor genes associated with yield traits in chickpea.┬аPlant Molecular Biology Reporter┬а35:562-574
Kujur A, Upadhyaya HD, Bajaj D, Gowda CL, Sharma S, Tyagi AK,┬аParida SK┬а(2016) Identification of candidate genes and natural allelic variants for QTLs governing plant height in chickpea.┬аScientific Reports┬а6:27968.
Srivastava R, Bajaj D, Malik A, Singh M,┬аParida SK┬а(2016) Transcriptome landscape of perennial wild┬аCicer microphyllum┬аuncovers functionally relevant molecular tags regulating agronomic traits in chickpea.┬аScientific Reports┬а6:33616.
Upadhyaya HD, Bajaj D, Das S, Kumar V, Gowda CLL, Sharma S, Tyagi AK,┬аParida SK┬а(2016) Genetic dissection of seed-iron and zinc concentrations in chickpea.┬аScientific Reports┬а6:24050.┬а
Badoni S, Das S, Sayal SYK, Gopalakrishnan S, Singh AK, Rao AR, Agarwal P,┬аParida SK, Tyagi AK (2016) Genome-wide generation and use of informative intron-spanning and intron-length polymorphism markers for high-throughput genetic analysis in rice.┬аScientific Reports┬а6:23765.
Das S, Singh M, Srivastava R, Bajaj D, Saxena MS, Rana JC, Bansal KC, Tyagi AK,┬аParida SK┬а(2016) mQTL-seq delineates functionally relevant candidate gene harbouring a major QTL regulating pod number in chickpea.┬аDNA Research┬а23:53-65.
Das S, Singh M, Srivastava R, Bajaj D, Saxena MS, Rana JC, Bansal KC, Tyagi AK,┬аParida SK┬а(2016) mQTL-seq delineates functionally relevant candidate gene harbouring a major QTL regulating pod number in chickpea.┬аDNA Research┬а23:53-65.
Daware A, Das S, Srivastava R, Badoni S, Singh AK, Agarwal P,┬аParida SK, Tyagi AK (2016) An efficient strategy combining SSR markers-and advanced QTL-seq-driven QTL mapping unravels candidate genes regulating grain weight in rice.┬аFrontiers in Plant Science┬а7: 1535.
Srivastava R, Singh M, Bajaj D,┬аParida SK┬а(2016) A high-resolution InDel (Insertion-Deletion) markers-anchored consensus genetic map identifies major QTLs governing pod number and seed yield in chickpea.┬аFrontiers in Plant Science┬а7:1362.
Upadhyaya HD, Bajaj D, Narnoliya L, Das S, Kumar V, Gowda CLL, Sharma S, Tyagi AK, ┬аParida SK┬а(2016) Genome-Wide Scans for Delineation of Candidate Genes Regulating Seed-Protein Content in Chickpea.┬аFrontier in Plant Science┬а7:302.
Bajaj D, Srivastava R, Tripathi S, Bharadwaj C, Upadhyaya HD, Tyagi AK,┬аParida SK┬а(2016) EcoTILLING-based association mapping efficiently delineates functionally relevant natural allelic variants of candidate genes governing agronomic traits in chickpea.┬аFrontiers in Plant Science┬а7:450.┬а
Bajaj D, Upadhyaya HD, Das S, Kumar V, Gowda CL, Sharma S, Tyagi AK,┬аParida SK┬а(2016) Identification of candidate genes for dissecting complex branch number trait in chickpea.┬аPlant Science 245:61-70.
Srivastava R, Bajaj D, Sayal YK, Meher PK, Upadhyaya HD, Kumar R, Tripathi S, Bharadwaj C, Rao AR,┬аParida SK┬а(2016) Genome-wide development and deployment of informative intron-spanning and intron-length polymorphism markers for genomics-assisted breeding applications in chickpea.┬аPlant Science┬а252:374-387.
Das S, Bajaj D, Krishnan SG, Singh AK,┬аParida SK┬а(2016) Revisiting the decoded genomes to promptly reveal their genomic perspectives.┬аCurrent Science┬а112:279-294.
Bajaj D, Saxena MS, Kujur A, Das S, Badoni S, Tripathi S, Upadhyaya HD, Gowda CLL, Sharma S, Singh S, Tyagi AK,┬аParida SK┬а(2015) Genome-wide conserved non-coding microsatellite (CNMS) marker-based integrative genetical genomics for quantitative dissection of seed weight in chickpea.┬аJournal of Experimental Botany┬а66:1271-1290
Das S, Upadhyaya HD, Srivastava R, Bajaj D, Gowda CLL, Sharma S, Singh S, Tyagi AK,┬аParida SK┬а(2015) Genome-wide insertion-deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea.┬аDNA Research┬а22:377-386.
Das S, Upadhyaya HD, Bajaj D, Kujur A, Badoni S, Laxmi, Kumar V, Tripathi S,┬а Gowda CLL, Sharma S, Singh S, Tyagi AK,┬аParida SK┬а(2015) Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea.┬аDNA Research22:193-203.
Bajaj D, Upadhyaya H, Khan Y, Das S, Badoni S, Shree T, Kumar V, Tripathi S, Gowda CLL, Singh S, Sharma S, Tyagi AK, Chattopadhyay D,┬аParida SK┬а(2015) A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea.┬аScientific Reports┬а5:9264.
Kujur A, Upadhyaya HD, Shree T, Bajaj D, Das S, Saxena M, Badoni S, Kumar V, Tripathi S, Gowda CLL, Sharma S, Singh S, Tyagi AK,┬аParida SK┬а(2015) Ultra-high density intra-specific genetic linkage maps accelerate identification of functionally relevant molecular tags governing important agronomic traits in chickpea.┬аScientific Reports┬а5:9468.
Kujur A, Bajaj D, Upadhyaya HD, Das S, Ranjan R, Shree T, Saxena MS, Badoni S, Kumar V, Tripathi S, Gowda CLL, Sharma S, Singh S, Tyagi AK,┬аParida SK┬а(2015) A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea.┬аScientific Reports┬а5:11166.
Bajaj D, Das S, Badoni S, Kumar V, Singh M, Bansal KC, Tyagi AK,┬а┬аParida SK┬а(2015) Genome-wide high-throughput SNP discovery and genotyping for understanding natural (functional) allelic diversity and domestication patterns in wild chickpea.┬аScientific Reports┬а5:11627.
Bajaj D, Das S, Upadhyaya HD, Ranjan R, Badoni S, Kumar V, Tripathi S, Gowda CLL, Sharma S, Singh S, Tyagi AK,┬аParida SK┬а(2015) A genome-wide combinatorial strategy dissects complex genetic architecture of seed coat color in chickpea.┬аFrontiers in Plant Science┬а6:979.
Kujur A, Bajaj D, Saxena MS, Upadhyaya HD, Das S, Ranjan R, Shree T, Saxena MS, Badoni S, Kumar V, Tripathi S, Gowda CLL, Sharma S, Singh S, Tyagi AK, Jain M,┬аParida SK┬а(2015) Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea.┬аFrontiers in Plant Science┬а6:162.
Upadhyaya HD, Bajaj D, Das S, Saxena MS, Badoni S, Kumar V, Tripathi S, Sharma S, Tyagi AK,┬аParida SK┬а(2015) A genome-scale integrated approach aids in genetic dissection of complex flowering time trait in chickpea.┬аPlant Molecular Biology┬а89:403-420.
Bajaj D, Das S,┬аParida SK┬а(2015) CNMS: The preferred genic markers for comparative genomic, molecular phylogenetic, functional genetic diversity and differential gene regulatory expression analyses in chickpea.┬аJournal of Biosciences40:579-592
Saxena MS, Bajaj D, Das S, Kujur A, Kumar V, Singh M, Bansal KC, Tyagi AK,┬аParida SK┬а(2014) An integrated genomic approach for rapid delineation of candidate genes regulating agro-morphological traits in chickpea.┬аDNA Research┬а21:695-710.
Saxena MS, Bajaj D, Kujur A, Das S, Badoni S, Kumar V, Singh M, Bansal KC, Tyagi AK,┬аParida SK┬а(2014) Natural allelic diversity, genetic structure and linkage disequilibrium pattern in wild chickpea.┬аPLOS ONE┬а9:e107484.
Kujur A, Bajaj D, Saxena MS, Tripathi S, Upadhyaya HD, Gowda CLL, Singh S, Tyagi AK, Jain M,┬аParida SK┬а(2014) An efficient and cost-effective approach for genic microsatellite marker-based large-scale trait association mapping: identification of candidate genes for seed weight in chickpea.┬аMolecular Breeding32:241-265.
Kujur A, Bajaj D, Saxena MS, Tripathi S, Upadhyaya HD, Gowda CLL, Singh S, Jain M, Tyagi AK,┬аParida SK┬а(2013) Functionally relevant microsatellite markers from chickpea transcription factor genes for efficient genotyping applications and trait association mapping.┬аDNA Research┬а20:355-374.
First Author
Agarwal P,┬аParida SK, Raghuvanshi S, Kapoor S, Khurana P, Khurana JP, Tyagi AK (2016) Rice improvement through genome-based functional analysis and molecular breeding in India.┬аRice┬а9:1┬а(As Joint First Author)
Parida SK, Kalia S, Pandit A, Nayak P, Singh RK, Gaikwad K, Srivastava PS, Singh NK, Mohapatra T (2016) Single nucleotide polymorphism in sugar pathway and disease resistance genes in sugarcane.┬аPlant Cell Reports┬а35:1629-1653.
Parida SK, Verma M, Yadav SK, Ambawat S, Das S, Garg R, Jain M (2015) Development of genome-wide informative simple sequence repeat markers for large-scale genotyping applications in chickpea and development of web resource.┬аFrontiers in Plant Science┬а6:645.
Parida SK, Mukerji M, Singh AK, Singh NK, Mohapatra T (2012) SNPs in stress responsive rice genes: validation and genotyping using Illumina GoldenGate assay.┬аBMC Genomics┬а13:426.
Parida SK, Pandit A, Gaikwad K, Sharma TR, Srivastava PS, Singh NK, Mohapatra T (2010). Functionally relevant microsatellites in sugarcane unigenes.┬аBMC Plant Biology┬а10:251.
Ngangkham Umakanta,┬аParida SK, Dey SK, Raj Kumar KA, Singh AK, Singh NK, Mohapatra T (2010). Genic markers for WA cytoplasm based male sterility and its fertility restoration in rice.┬аMolecular Breeding┬а26:275-292┬а(As Joint First Author).
Parida SK, Yadava DK, Mohapatra T (2010). Microsatellites in┬аBrassica┬аunigenes: Relative abundance, marker design and use in comparative physical mapping and genome analysis.┬аGenome53:55-67.
Parida SK, Dalal V, Singh NK, Mohapatra T (2009) Genic non-coding microsatellites in the rice genome: characterization, marker design and use in assessing genetic and evolutionary relationships among domesticated groups.┬аBMC Genomics10:140.
Parida SK, Kalia SK, Kaul S, Dalal V, Hemaprabha G, Selvi A, Pandit A, Singh A, Gaikwad K, Sharma TR, Srivastava PS, Singh NK, Mohapatra T (2009) Informative genomic microsatellite markers for efficient genotyping applications in sugarcane.┬аTheoretical and Applied Genetics118:327-338.
Parida SK, Raj Kumar KA, Dalal V, Singh NK, Mohapatra T (2006) Unigene derived microsatellite markers for the cereal genomes.┬аTheoretical and Applied Genetics┬а112:808-817.
Co-authors
Chakraborty A, Singh B, Pandey V,┬аParida SK, Bhatia S (2024) MicroRNA164e suppresses NAC100 transcription factor-mediated synthesis of seed storage proteins in chickpea.┬аNew Phytologist┬а242:2652-2668.
Sahu TK, Verma SK, Gayacharan, Singh NP, Joshi DC, Wankhede DP, Singh M, Bhardwaj R, Singh B,┬аParida SK, Chattopadhyay D, Singh GP, Singh AK (2024) Transcriptome-wide association mapping provides insights into the genetic basis and candidate genes governing flowering, maturity and seed weight in rice bean┬а(Vigna umbellata).┬аBMC Plant Biology┬а24:379.
Prusty A, Mehra P, Sharma S, Malik N, Agarwal P,┬аParida SK, Kapoor S, Tyagi AK (2024)┬аOsMED14_2, a tail module subunit of Mediator complex, controls rice development and involves jasmonic acid.┬аPlant Science┬а346:112146.
Awasthi R, Devi P, Jha UC, Sharma KD, Roorkiwal M, Kumar S, Pareek A, Siddique K.H.M., Vara Prasad PV,┬аParida SK, Nayyar H (2024) Exploring the synergistic effects of drought and heat stress on chickpea seed development: Insights into nutritional quality and seed yield.┬аPlant Stress┬а14:100635.
Harish D, Reddy SP, Kumar N, Bharadwaj C, Kumar T,┬аParida SK, Patil BS, Sudhir K, Jain PK, Kumar Y, Varshney RK (2024) Integrating multilocus genome-wide association studies in chickpea landraces to discern the genetics of drought tolerance.┬аFrontiers in Sustainable Food Systems┬аDOI:10.3389/fsufs.2024.1389970.
Patil NS, Hegde V, Vinod, KK,┬аParida SK, Jain PK (2024) Genome-wide association studies for flowering time, shelling percentage, harvest index and related traits in chickpea┬а(Cicer arietinum L.).┬аEuphytica┬а220:144.
Gupta SK, Dwivedi V, Kute NS, Francis P,┬аParida SK, Chattopadhyay D (2024) Identification of a stable drought-tolerant high-yielding line for chickpea crop improvement.┬аPlant Molecular Biology Reporter┬аDOI:10.1007/s11105-024-01471-4.
Chandel SS, Gaikwad DS, Rathour R, Dohru VK, Sirari A, Jha U,┬аParida SK, Sharma KD (2024) Differential expression of antimicrobial metabolites, phenylpropanoid and phytohormone metabolic pathway genes determines resistance or susceptibility to┬аAscochyta rabiei┬аin chickpea.┬аPlant Pathology┬а73:1247-1263.
Kumar T, Bharadwaj C, Jain PK, Nimmy MS, Joshi N,┬аParida SK, Bindra S, Kole C, Varshney RK. Unraveling the genetics of heat tolerance in chickpea landraces┬а(Cicer arietinum L.)┬аusing genome-wide association studies.┬аFrontiers in Plant Science┬а15:1376381.
Banerjee G, Singh D, Pandey C, Jonwal S, Basu U,┬аParida SK, Pandey A, Sinha AK (2023) Rice Mitogen-Activated Protein Kinase regulates serotonin accumulation and interacts with cell cycle regulators under prolonged UV-B exposure.┬аPlant Physiology Biochemistry┬а203:108078.
Jha UC, Nayyar H, Roychowdhury R, Vara Prasad P.V., Parida SK, Siddique K.H.M. (2023) Non-coding RNAs (ncRNAs) in plant: Master regulators for adapting to extreme temperature conditions.┬аPlant Physiology Biochemistry┬а205:108164.
Dwivedi V, Pal L, Singh S, Singh NP,┬аParida SK, Chattopadhyay D (2023) The chickpea WIP2 gene underlying a major QTL contributes to lateral root development.┬аJournal of Experimental Botany┬аerad171; https://doi.org/10.1093/jxb/erad171.
Mahto A, Yadav A, Awasthi PV,┬аParida SK, Tyagi AK, Agarwal P (2023) Cytological, transcriptome and miRNome temporal landscapes decode enhancement of rice grain size.┬аBMC Biology┬а21:91 https://doi.org/10.1186/s12915-023-01577-3.
Sharma P, Goudar G, Chandragiri AK, Ananthan R, Subhash K, Chauhan A, Longvah T, Singh M, Bhardwaj R,┬аParida SK, Singh AK, Gayacharan, Chattopadhyay D (2023) Assessment of diversity in anti-nutrient profile, resistant starch, minerals and carbohydrate components in different ricebean (Vigna umbellata) accessions.┬аFood Chemistry┬а405(A):134835 https://doi.org/10.1016/j.foodchem.2022.134835.
Chakraborty A, Junaid A,┬аParida SK, Bhatia S (2023) Integrated genomic approaches delineate a novel role of ROP1 ENHANCER1 in controlling seed protein content of chickpea.┬аJournal of Experimental Botany┬а74:817-834.
Gayacharan,┬аParida SK, Mondal N, Yadav R, Vishwakarma H, Rana JC (2023) Mining legume germplasm for genetic gains: An Indian perspective.┬аFrontiers in Genetics┬а14:996828.
Jha UC, Nayyar H, Parida SK, Beena R, Pang J, Siddique KHM (2023) Breeding and genomics approaches for improving phosphorus-use efficiency in grain legumes.┬аEnvironment and Experimental Botany┬а205:105120.
Verma SK, Mittal S, Gayacharan, Wankhede DP,┬аParida SK, Chattopadhyay D, Prasad G, Mishra DC, Joshi DC, Singh M, Singh K, Singh AK (2022) Transcriptome Analysis Reveals Key Pathways and Candidate Genes Controlling Seed Development and Size in Ricebean (Vigna umbellata).┬аFrontiers in Genetics┬а12:791355.
Jha UC, Sharma KD, Nayyar H, Parida SK, Siddique KHM (2022) Breeding and Genomics Interventions for Developing Ascochyta Blight Resistant Grain Legumes.┬аInternational Journal of Molecular Sciences┬а23:2217.
Devi P, Jha UC, Prakash V, Kumar S,┬аParida SK,┬аPaul PJ, Prasad PVV, Sharma KD, Siddique KHM and Nayyar H (2022) Response of physiological, reproductive function and yield traits in cultivated chickpea (Cicer arietinum L.) under heat stress.┬аFrontiers in Plant Science┬а13:880519.
Jha UC, Nayyar H,┬аParida SK, Deshmukh R, von Wettberg EJB, Siddique KHM (2022) Ensuring global food security by improving protein content in major grain legumes using breeding and ‘Omics’ tools.┬аInternational Journal of Molecular Sciences┬а23:7710.
Jha UC, Nayyar H,┬аParida SK, M Bakir, Wettberg EV, Siddique KHM (2022) Progress of genomics-driven approaches for sustaining underutilized legume crops in the post-genomic era.┬аFrontiers in Genetics. https://doi.org/10.3389/fgene.2022.831656.
Mehra P, Pandey BK, Verma L, Prusty A, Singh AP, Sharma S, Malik N, Bennet MJ, Parida SK, Giri, J, Tyagi AK (2022) OsJAZ11 regulates spikelet and seed development in rice. Plant Direct 6: e401.
Pandey S, Singh A,┬аParida SK, Prasad M (2022) Combining speed breeding with traditional and genomics-assisted breeding for crop improvement.┬аPlant Breeding┬а141:301-313. https://doi.org/10.1111/pbr.13012.
Shimray PW, Bharadwaj C, Patil BS, Sankar SM, Kumar N, Reddy SPP, Singhal T, Hegde V, Parida SK, Roorkiwal M, Varshney RK, Verma P (2022) Evaluation and Identification of Stable Chickpea Lines for Yield-Contributing Traits from an Association Mapping Panel.┬аAgronomy┬а12:3115.
Giri J,┬аParida SK, Raghuvanshi S, Tyagi AK (2021) Emerging molecular strategies for improving rice drought tolerance. Current Genomics 22:16-25.
Jha UC, Jha R, Bohra A, Manjunatha L, Saabale PR, Parida SK, Chaturvedi SK, Thakro V and Singh NP (2021) Association mapping of genomic loci linked with Fusarium wilt resistance (Foc2) in chickpea.┬аPlant Genetic Resources┬а19:195-202
Jha UC, Jha R, Thakro V, Kumar A, Gupta S, Nayyar H, Basu P,┬аParida SK, Singh NP (2021) Discerning molecular diversity and association mapping for phenological, physiological and yield traits under high temperature stress in chickpea (Cicer arietinum L.).┬аJournal of Genetics┬а100:1-15.
Dharajiya DT, Shah A, Galvadiya BP, Patel MP, Srivastava R, Pagi NK, Solanki SD,┬аParida SK, Tiwari KK (2020) Genome-wide microsatellite markers in castor (Ricinus communis L.): Identification, development, characterization, and transferability in Euphorbiaceae.┬аIndustrial Crops and Products┬а151:112461.
Kumar A, Daware A, Kumar A, Kumar V, Gopala Krishnan S, Mondal S, Patra BC, Singh AK, Tyagi AK,┬аParida SK, Thakur JK (2020) Genome-wide analysis of polymorphisms identified domestication-associated long low-diversity region carrying important rice grain size/weight quantitative trait loci.┬аPlant Journal┬а103:1525-1547.
Malik N, Ranjan R,┬аParida SK, Agarwal P, Tyagi AK (2020) Mediator subunit OsMED14_1 plays an important role in rice development.┬аPlant Journal┬а101:1411-1429.
Jha UC, Bohra A, Pandey S,┬аParida SK┬а(2020) Breeding, genetics, and genomics approaches for improving Fusarium wilt resistance in major grain legumes. Frontiers in Genetics 11:1001.
Mathew IE, Priyadarshini R, Mahto A, Jaiswal P,┬аParida SK, Agarwal P (2020) SUPER STARCHY1/ONAC025 participates in rice grain filling. Plant Direct 4:e00249.
Singh RK, Prasad A, Muthamilarasan M,┬аParida SK, Prasad M (2020) Breeding and biotechnological interventions for trait improvement: status and prospects.┬аPlanta┬а252:1-18.
Kohli PS, Verma PK, Verma R,┬аParida SK, Thakur JK, Giri J (2020) Genome-wide association study for phosphate deficiency responsive root hair elongation in chickpea.┬аFunctional & Integrative Genomics┬а20:775-786.
Dwivedi N, Maji S, Waseem M, Thakur P, Kumar V,┬аParida SK, Thakur JK (2019) The Mediator subunit OsMED15a is a transcriptional co-regulator of seed size/weight-modulating genes in rice.┬аBiochimica et Biophysica Acta – Gene Regulatory Mechanisms┬а1862:194432.
Das S,┬аParida SK, Agarwal P, Tyagi AK (2019) Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.┬аPlanta┬а250:1849-1865.
Pandey S, Kumari A, Shree M, Kumar V, Singh P, Bharadwaj C, Loake GJ,┬аParida SK, Masakapalli SK, Gupta KJ (2019) Nitric oxide accelerates germination via the mregulation of respiration in chickpea.┬аJournal of Experimental Botany┬аDOI:10.1093/jxb/erz185.
Jha UC, Bohra A, Jha R,┬аParida SK┬а(2019) Salinity stress response and ‘omics’ approaches for improving salinity stress tolerance in major grain legumes.┬аPlant Cell Reports┬а38:255-277.
Jha UC, Bohra A, Nayyar H, Rani A, Devi P, Saabale PR,┬аParida SK┬а(2019) Breeding and Genomics Approaches for Improving Productivity Gains in Chickpea Under Changing Climate.┬а In: Kole C. (eds) Genomic Designing of Climate-Smart Pulse Crops. Springer, Cham, pp-135-164.
Kumar K, Purayannur S, Kaladhar VC,┬аParida SK┬аand Verma PK (2018) mQTL-seq and classical mapping implicates the role of an AT-HOOK MOTIF CONTAINING NUCLEAR LOCALIZED (AHL) family gene in┬аAscochyta┬аblight resistance of chickpea.┬аPlant Cell & Environment┬а41:2128-2140.
Jha UC, Jha R, Bohra A,┬аParida SK, Kole PC, Thakro V, Singh D and Singh NP (2018) Population structure and association analysis of heat stress relevant traits in chickpea (Cicer arietinum┬аL.).┬а3 Biotech┬а8:43.
Ranjan R, Khurana R, Malik N, Badoni S,┬аParida SK, Kapoor S, Tyagi AK (2017)┬аbHLH142┬аregulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.┬аScientific Reports┬а7:43397.
Malik N, Dwivedi N, Singh AK,┬аParida SK, Agarwal P, Thakur JK, Tyagi AK (2016) An integrated genomic strategy delineates candidate mediator genes regulating grain size and weight in rice.┬аScientific Reports┬а6:23253.
Bhadouria J, Singh AP, Mehra P, Verma L, Srivastawa R,┬аParida SK,┬аGiri J (2017) Identification of purple acid phosphatases in chickpea and potential roles of┬аCaPAP7┬аin seed phytate accumulation.┬аScientific Reports┬а7:11012.
Jha UC, Bohra A,┬аParida SK,┬аJha R (2017) Integrated тАЬomicsтАЭ approaches to sustain global productivity of major grain legumes under heat stress.┬аPlant Breeding┬а136:437-459
Gupta S, Nawaz K, Parween S, Roy R, Sahu K, Pole AK, Khandal H, Srivastava R,┬аParida SK, Chattopadhyay D (2016) Draft genome sequence of┬аCicer reticulatum┬аL., the wild progenitor of chickpea provides a resource for agronomic trait improvement.┬аDNA Research┬а24:1-10.
Kumar V, Singh A, Amitha Mithra SV, Krishnamurthy SL,┬аParida SK, Jain S, Tiwari KK, Kumar P, Rao AR, Sharma SK, Khurana JP, Singh NK, Mohapatra T (2015) Genome-wide association mapping of salinity tolerance in rice (Oryza sativa).┬аDNA Research┬а22:133-145.
Parween S, Nawaz K, Roy R, Pole AK, Venkata Suresh B, Misra G, Jain M, Yadav G,┬аParida SK, Tyagi AK, Bhatia S, Chattopadhyay D (2015) An advanced draft genome assembly of a┬аdesi┬аtype chickpea (Cicer arietinum┬аL.).┬аScientific Reports┬а5:12806.
Singh AP, Pandey BK, Deveshwar P, Narnoliya L,┬аParida SK, Giri J (2015) JAZ repressors: potential involvement in nutrients deficiency response in rice and chickpea.┬аFrontier in Plant Science┬а6:975.
Khajuria YP, Saxena MS, Gaur R, Chattopadhyay D, Jain M,┬аParida SK, Bhatia S (2015) Development and integration of genome-wide polymorphic microsatellite markers onto a reference linkage map for constructing a high-density genetic map of chickpea.┬аPLOS ONE10:e0125583.
Agarwal P,┬аParida SK, Mahto A, Das S, Mathew IE, Malik N, Tyagi AK (2014) Expanding frontiers in plant transcriptomics in aid of functional genomics and molecular breeding.┬аBiotechnology Journal┬а9:1480-1492.
Mishra AK, Muthamilarasan M, Khan Y,┬аParida SK, Prasad M (2014) Genome-wide investigation and expression analyses of WD40 protein family in the model plant foxtail millet (Setaria italica┬аL.).┬аPLOS ONE┬а9:e86852.
Gupta S, Kumari K, Muthamilarasan M,┬аParida SK,┬аPrasad M (2014) Population structure and association mapping of yield contributing agronomic traits in foxtail millet.┬аPlant Cell Reports33:881-893.
Tiwari KK, Singh A, Pattnaik S, Sandhu M, Kaur S, Jain S, Tiwari S, Mehrotra S, Anumalla M, Samal R, Bhardwaj J, Dubey N, Sahu V, Kharshing GA, Zeliang PK, Sreenivasan K, Kumar P,┬аParida SK, Mithra SVA, Rai V, Tyagi W, Agarwal PK, Rao AK, Pattanayak A, Chandel G, Singh AK, Bisht IS, Bhat KV, Rao GJN, Khurana JP, Singh NK, Mohapatra T (2014) Identification of a diverse mini-core panel of Indian rice germplasm based on genotyping using microsatellite markers.┬аPlant Breeding┬а134:164-171.
Muthamilarasan M,┬аParida SK, Prasad M (2014) Advances in wheat genomics and its potential in ensuring food security in the scenario of climate change.┬аProceedings of the Indian National Science Academy80:325-331.
Pandey G, Misra G, Kumari K, Gupta S,┬аParida SK, Chattopadhyay D, Prasad M (2013) Genome-wide development and use of microsatellite markers for large-scale genotyping applications in foxtail millet [Setaria italica┬а(L.)].┬аDNA Research┬а20:197-207.
Muthamilarasan M, Venkata SB, Pandey G, Kumari K,┬аParida SK, Prasad M (2014) Development of 5123 Intron length polymorphic (ILP) markers for large-scale genotyping applications in foxtail millet.┬аDNA Research┬а21:41-52.
Puranik S, Sahu PP, Mandal SN,┬аParida SK,┬аPrasad M (2014) Comprehensive genome-wide survey, genomic constitution and expression profiling of the NAC transcription factor family in foxtail millet [Setaria italica┬а(L.)].┬аPLOS ONE┬а8:e64594.
Kumari K, Muthamilarasan M, Misra G, Gupta S, Subramanian A,┬аParida SK, Chattopadhyay D, Prasad M (2014) Development of eSSR-markers in┬аSetaria italica┬аand their applicability in studying genetic diversity, cross-transferability and comparative mapping in millet and non-millet species.┬аPLOS ONE┬а8:e67742.
Thakur JK, Agarwal P,┬аParida SK, Bajaj D, Pasrija R (2014) Sequence and expression analyses of KIX domain proteins suggest their importance in seed development and determination of seed size in rice, and genome stability in┬аArabidopsis.┬аMolecular Genetics and Genomics┬а288:329-346.
Das B, Sengupta S,┬аParida SK, Roy B, Ghosh M, Prasad M, Ghose TK (2014) Genetic diversity and population structure of rice landraces from Eastern and North Eastern States of India.┬аBMC Genetics┬а14:71.
Dixit N, Dokku P, Amitha Mithra SV,┬аParida SK, Singh AK, Singh NK, Mohapatra T (2014) Haplotype structure in grain weight gene┬аGW2┬аand its association with grain characteristics in rice.┬аEuphytica┬а192:55-61.
Das A,┬аParida SK┬а(2014) Advances in biotechnological applications in three important food legumes.┬аPlant Biotechnology Reports┬а8:83-99.
Jhanwar S, Priya P, Garg R,┬аParida SK, Tyagi AK, Jain M (2012) Transcriptome sequencing of wild chickpea as a rich resource for marker development.┬аPlant Biotechnology Journal┬а10:690-702.
Agarwal G, Jhanwar S, Priya P, Singh VK, Saxena MS,┬аParida SK, Garg R, Tyagi AK, Jain M (2012) Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers.┬аPLOS ONE┬а7:e52443.
Bharathi LK,┬аParida SK, Munshi AD, Behera TK, Raman KV, Mohapatra T (2011) Molecular diversity and phylogeny of Momordica spp. of Indian occurrence.┬аGenetic Resources and Crop Evolution┬а59:937-948.
Naik PK, Alam MA, Singh H, Goyal V,┬аParida SK, Kalia S, Mohapatra T (2010) Assessment of genetic diversity through RAPD, ISSR and AFLP markers in┬аPodophyllum hexandrum: a medicinal herb from the Northwestern Himalayan region.┬аPhysiology and Molecular Biology of Plants┬а16:1-13.
Yadava, DK,┬аParida SK, Dwivedi VK, Varshney A, Ghazi IA, Sujata V, Mohapatra T (2009). Cross-transferability and polymorphic potential of genomic STMS markers of┬аBrassica┬аspecies.┬аJournal of Plant Biochemistry and Biotechnology┬а18:29-36.
Sonah H, Desmukh R,┬аParida SK,┬аKotasthane A (2009) Morphological and genetic variation among different isolates of┬аMagnaporthe grisea┬аcollected from Chhattisgarh.┬аIndian Phytopathology┬а62:469-477.
Koundal V,┬аParida SK, Yadava DK, Ali A, Koundal KR, Mohapatra T (2008). Evaluation of microsatellite markers for genome mapping in Indian mustard (Brassica juncea┬аL.).┬аJournal of Plant Biochemistry and Biotechnology┬а17:69-72.
Verma VK, Behera TK, Munshi AD,┬аParida SK, Mohapatra T (2007). Genetic diversity of ash gourd [(Benincasa hispida┬а(Thunb.) Cogn.] inbred lines based on RAPD and ISSR markers and their hybrid performance.┬аScientia Horticulturae┬а113:231-237.
Book Chapter
Gayacharan,┬аParida SK, Singh AK, Chattopadhyay D, Joshi DC, Katna G (2024) Rice Bean┬а(Vigna umbellata┬а(Thunb.) Ohwi & Ohashi) Potential Pulses: Genetic and Genomic Resources.┬аCABI Publisher, pp. 100-115. DOI:10.1079/9781800624658.0006.
Basu U,┬аParida SK┬а(2023) CLAVATA signaling pathway receptors modulate developmental traits and stress responses in crops. In: Upadhyay SK, Shumayla (eds),┬аPlant Receptor-Like Kinases. Elsevier┬аB.V., pp 371-392.https://doi.org/10.1016/B978-0-323-90594-7.00004-1.
Jha UC, Nayyar H,┬аParida SK, Siddique KHM (2022) Horse gram, an underutilized climate-resilientlegume: Breeding and genomic approach for improving future genetic gain. Developing┬аClimate Resilient Grain and Forage Legumes. 167-178.
Daware A,┬аParida SK, Tyagi AK (2020) Integrated genomic strategies for cereal genetic enhancement: combining QTL and association mapping.┬аCereal Genomics┬а2072:15-25.
Tripathi S, Singh RK,┬аParida SK, Chaturvedi SK, Gaur PM, Kumar S, Dikshit HK, Mishra GP, Singh A (2022)┬аBiofortification of Chickpea. Biofortification of Staple Crops, Springer Singapore, pp 335-344 doi.org/10.1007/978-981-16-3280-8_13.
Mohanty JK,┬аParida SK┬а(2022) Small RNA-omics: Decoding the regulatory networks associated with horticultural traits.┬аOmics in Horticultural Crops┬аdoi.org/10.1016/B978-0-323-89905-5.00001-X.
Jha UC, Bohra A, Nayyar H, Rani A, Devi P, Saabale PR, Parida SK (2019) Breeding and Genomics Approaches for Improving Productivity Gains in Chickpea Under Changing Climate. In: Kole C. (eds)┬аGenomic Designing of Climate-Smart Pulse Crops. Springer, Cham, pp-135-164.
Jha UC, Barh D,┬аParida SK, Jha R, Singh NP (2016) Whole-genome resequencing: current status and future prospects in genomics-assisted crop improvement.┬аApplied Molecular Biotechnology: The Next Generation of Genetic Engineering, CRC Press, Taylor & Francis Group, Inc,┬а209-234.
Das S,┬аParida SK┬а(2015) Synergistic plant genomics and molecular breeding approaches for ensuring food security. In┬аGenomics, Proteomics and Metabolomics in Nutraceuticals and Functional Foods, Second Edition (eds Bagchi D, Swaroop A, Bagchi M),┬аJohn Wiley & Sons, Ltd, Chichester, UK. DOI: 10.1002/9781118930458.ch14.
Parida SK, Mohapatra T (2010) Whole genome sequencing. In: Kole C, Abbott AG (Eds)┬аPrinciples and Practices of Plant Genomics, Vol 3, Advanced Genomics, Science Publishers, Inc, New Hampshire and Edenbridge Ltd, British Isles, pp 120-174.
Review Articles
Mohanty JK,┬аParida SK┬а(2024) Stripping off the rice panicle: induced genetic variation awakens the sheathed spikelet for a better yield.┬аJournal of Experimental Botany┬а75:5459-5462.
Jha UC, Nayyar H, Roychowdhury R, Prasad PVV,┬аParida SK, Siddique KHM (2024) Non-coding RNAs (ncRNAs) in plant: Master regulators for adapting to extreme temperature conditions.┬аPlant Physiology Biochemistry┬а205:108164
Basu U,┬аParida SK┬а(2021) Restructuring plant types for developing tailor-made crops.┬аPlant Biotechnology Journal┬а21:1106-1122.
Basu U and┬аParida SK┬а(2023) The developmental dynamics in cool season legumes with focus on chickpea.┬аPlant Molecular Biology┬а111:473-491.
Giri J,┬аParida SK, Raghuvanshi S and Tyagi AK (2021) Emerging molecular strategies for improving rice drought tolerance.┬аCurrent Genomics┬а22:16-25.
Pandey S, Singh A,┬аParida SK, Prasad M (2022) Combining speed breeding approaches with conventional and genomics-assisted breeding for crop improvement.┬аPlant Breeding┬а141:301-313.
Daware A,┬аParida SK, Tyagi AK (2020) Integrated genomic strategies for cereal genetic enhancement: combining QTL and association mapping.┬аCereal Genomics┬а2072:15-25.
Jha UC, Bohra A, Pandey S,┬аParida SK┬а(2020) Breeding, genetics, and genomics approaches for improving Fusarium wilt resistance in major grain legumes.┬аFrontiers in Genetics┬а11:1001.
Daware A, Parida SK, Tyagi AK (2019) Integrated Genomic Strategies for Cereal Genetic Enhancement: Combining QTL and Association Mapping.┬аMethods Molecular Biology┬а2072:15-25.
Jha UC, Bohra A, Jha R,┬аParida SK┬а(2019) Salinity stress response and ‘omics’ approaches for improving salinity stress tolerance in major grain legumes. Plant Cell Reports 38:255-277.
Jha UC, Sharma, KD, Nayyar H,┬аParida SK, Siddique KHM (2022) Breeding and Genomics Interventions for Developing Ascochyta Blight Resistant Grain Legumes.┬аInternational Journal of Molecular Science┬а23:2217.
Agarwal P,┬аParida SK, Raghuvanshi S, Kapoor S, Khurana P, Khurana JP, Tyagi AK (2016) Rice improvement through genome-based functional analysis and molecular breeding in India.┬аRice┬а9:1.
Agarwal P,┬аParida SK, Mahto A, Das S, Mathew IE, Malik N, Tyagi AK (2014) Expanding frontiers in plant transcriptomics in aid of functional genomics and molecular breeding.┬аBiotechnology Journal┬а9:1480-1492.
Kujur A, Saxena MS, Bajaj D, Laxmi,┬аParida SK┬а(2013) Integrated genomics and molecular breeding approaches for dissecting the complex quantitative traits in crop plants.┬аJournal of Biosciences┬а38:971-987.
Das A,┬аParida SK┬а(2013) Advances in biotechnological applications in three important food legumes.┬аPlant Biotechnology Reports┬а8:83-99.
Web-Resources, Database & Tools
“Rice Pan-Genome Genotyping Array Analysis Portal (RAP)”http://www.rpgaweb.com
Crop Genome-Wide Association Studies Resource;┬а“GWAShub”www.gwashub.com
“Oryza ISM-ILP Marker Database”http://webapp.cabgrid.res.in/ismdb/┬аor┬аhttp://bioinformatics.iasri.res.in/ismdb/
“Chickpea ISM-ILP marker Database”/strong>┬аhttp://webapp.cabgrid.res.in/chickpea/┬аor┬аhttp://bioinformatics.iasri.res.in/chickpea
“CNSNP-CICARBASE”http://www.cnsnpcicarbase.com
PatentTechnologies and Products
Development of the First-ever 90K Pan-genome SNP Genotyping Arrays, “Indian Rice panArray (IndRA)” and “Indian Chickpea panArray (IndiCA)” for accelerated genomics-assisted crop improvement of rice and chickpea.
Next-generation Molecular Breeding Develops Superior High-Yielding Chickpea Variety
Annually, huge amount of yield loss is incurred due to occurrence of water stress at maturity in chickpea.┬аMarker-assisted backcross breeding-derived drought tolerant desi chickpea variety “ADVIKA (NC7)” developed by introgressing superior natural alleles of an ABC transporter gene in the genetic background of JG 16 enhances seed weight and yield (7% high) under drought stress.┬аThis is the┬аFirst high-yielding drought tolerant variety┬аdeveloped by DBT-NIPGR is now approved by the Central Sub-committee on Crop Standards, Notification and Release of Varieties (CVRC), Ministry of Agriculture & Farmers Welfare, Government of India, for┬аRelease and Notification as a Central Variety for National use and Cultivation especially in Central Zone of India.
Development of High-yielding Protein-rich Desi and Kabuli Varieties in Chickpea┬а[ICAR-All India Coordinated Research Projects (AICRP) on Chickpea-Advanced Varietal Trial].
Development of A Semi-erect/Semi-dwarf Chickpea Variety with Enhanced Planting Density and Productivity┬а[ICAR- AICRP on Chickpea-Advanced Varietal Trial]
Development of an Early-Flowering/Maturing Chickpea Variety with Increased Flower number and Enhanced Yield┬а[ICAR- AICRP Trials on Chickpea-Advanced Varietal Trial].
Patent
Thakro V, Malik N,┬аParida SK┬а(2021) DEVELOPMENT OF HIGH-YIELDING DROUGHT-TOLERANT PLANT LINES AND METHODS THERE OF┬а[INDIAN PATENT APPLICATION No. 202111028267].
Daware A,┬аParida SK┬а(2021) PAN-GENOME GENOTYPING ARRAY AND USES THEREOF┬а[INTERNATIONAL PATENT COOPERATION TREATY (PCT)-WIPO APPLICATION NO. PCT/IN2022/050901] & [INDIAN PATENT APPLICATION NO. 202111045696].
Basu U,┬аParida SK┬а(2021) AN ABC TRANSPORTER GENE MODULATING GLUTATHIONE CONJUGATES TRANSPORT AND UTILIZATION THEREOF┬а[INDIAN PATENT APPLICATION NO. 5467IN004].
Research in News
Development of First-ever 90K Pan-genome SNP Genotyping Arrays,┬а“Indian Rice panArray (IndRA)”┬аand┬а“Indian Chickpea panArray (IndiCA)”┬аappeared in the latest released E-book (Cutting-Edge Technologies Impacting Agriculture and Allied Areas, Page 18) by the DBT, Ministry of Science & Technology, Government of India┬аhttps://dbtindia.gov.in/latest-announcement/cutting-edge-technology-agriculture-and-allied-areas
SNP Arrays are released by Honourable Minister of Science & Technology Dr. Jitendra Singh Oct 8, 2021 for National Use.┬аThis technology has commercialized with Affymetrix Technologies, USA (Thermo Fisher Scientific, USA & Imperial Life Sciences, Gurgaon) for designing universal array for large-scale SNP genotyping applications in rice and chickpea.
