Publications
Kumar A, Daware A, Kumar A, Kumar V, Krishnan S Gopala, Mondal S, Patra BC, Singh AK, Tyagi AK, Parida SK and┬аThakur JK. Genome-wide analysis of polymorphisms identified grain trait-associated loci and domestication-associated polymorphism desert in rice.┬аPlant Journal┬а(2020) 103: 1525-1547.
Kumar A, Kumar S, Kumar A, Prasad M and┬аThakur JK. Designing a mini-core collection effectively representing 3004 diverse rice accessions.┬аPlant Communications┬а(2020) 1: 100049
Das D, Jaiswal M, Khan F N, Ahamad S and┬аKumar S*. PlantPepDB: A manually curated plant peptide database.┬аScientific reports┬а(2020), 10:2194.
Dwivedi N, Maji S, Waseem M, Kumar V, Parida SK and┬аThakur JK. The Mediator subunit OsMed15a is a transcriptional co-regulator of seed size/weight-modulating genes in rice.┬аBiochim Biophys Acta Gene Regul Mech┬а(2019) 1862: 194432
(Covered in news media like The Hindu, Deccan Herald, Nature India and Vigyan Prasar; Featured in “Rewind 2019: A look back at significant developments in Indian science this year:)
Maji S, Dahiya P, Waseem M, Dwivedi N, Bhat DS, Dar T and┬аThakur JK. Interaction map of Arabidopsis Mediator complex expounding its topology.┬аNucleic Acids Res┬а(2019) 47: 3904-3920.
Singh, A., Zahra S., Das D. and┬аKumar S.* AtFusionDB: A Database of Fusion Transcripts in Arabidopsis thaliana.┬аDatabase┬а(2019). Database (Oxford).Volume 2019 Jan 1.
Nagpal N, Sharma S, Maji S, Ferracin M,┬аThakur JK* and Kulshreshtha R*. Essential role of MED1 in the transcriptional regulation of ER-dependent oncogenic miRNAs in breast cancer.┬аSci Rep┬а(2018) 8(1):11805
Kumar V, Waseem M, Dwivedi N, Maji S, Kumar A and┬аThakur JK┬а(2018) KIX domain of AtMed15a, a Mediator subunit of Arabidopsis is required for its interaction with different proteins.┬аPlant Signal Behav┬а13(2): e1428514
Gupta, N., Zahra, S., Singh. A. and Kumar S.* PVsiRNAdb: A Database for Plant Exclusive Viral-derived small interfering RNAs. Database (2018). Database (Oxford).Volume 2018 Jan 1
Gupta, N., Singh, A., Zahra, S. and┬аKumar S*. PtRFdb: a database for plant transfer RNA-derived fragments. Database (2018).┬аDatabase┬а(Oxford). Volume 2018 Jan1.
Vivek AT, Zahra S and┬аKumar S*. From current knowledge to best practice: A primer on Viral diagnostics using deep sequencing of virus-derived small interfering RNAs (vsiRNAs) in infected plants.┬аMethods. (In Press)
Singh S, Qin F, Kumar S (Second Author), Elfman J, Lin E, Pham L, Yang A and Li H. (2020) The Landscape of Chimeric RNAs in Non-Diseased Tissues and Cells.┬аNucleic acids research.┬а48(4):1764-1778
Wu P, Yang S, Singh S, Qin F, Kumar S, Wang L, Ma D and Li H: (2018) The Landscape and Implications of Chimeric RNAs in Cervical Cancer.┬аEBioMedicine┬а37:158-167
Huang R, Kumar S, Li H: (2017) Absence of Correlation between Chimeric RNA and Aging.┬аGenes┬а8: 386.
Yadav A, Thakur JK and Yadav G* (2017) KIXBASE: A Comprehensive web resource for identification and exploration of KIX domains.┬аScientific Reports┬а7(1):14924.
Yadav G┬аand Mohanty, D (2017) Databases developed in India for Biological Sciences.┬аJournal of Proteins and Proteomics┬а8(3), 159-167
Patra B, Kon Y,┬аYadav G, Sevold A,.. Hintze A, Galas D and Ray A* (2017) A genome wide dosage suppressor network reveals genetic robustness┬аNucleic Acids Research┬а45(1),255-270
Priya P, Kumari S and┬аYadav G* (2016) Quantification of the plant terpenome: predicted versus actual emission potentials.┬аInd J Plant Phys┬аDOI: 10.1007/s40502-016-0256-x
Yadav G* and Babu S (2016) Evidence for alternate stable states in collapsing ecological networks. doi: Biorxiv/2016/046045
Amish K and┬аYadav G* (2016) Diversification of the Histone Fold Motif (HFM) in Plants: Evolution of New Functional Roles.┬аJournal of Life Sciences┬а(In Press)
Babu S and┬аYadav G* (2016) Life Science Co-Authorship Networks Reveal Patterns of Scientific Collaboration and Research Impact.┬аJournal of Life Sciences┬а(In Press)
Priya P, Bandhiwal N, Misra G, Mondal S and┬аYadav G* (2015) IGMAP: An Interactive Mapping and Clustering Platform for Plants.┬аMolecular Plant.┬а8(5): 818-821. doi:10.1016/j.molp.2015.01.018
Parween S, Nawaz K, Roy R, Pole AK, Venkata Suresh B, Misra G, Jain M,┬аYadav G, Parida SK, Tyagi AK, Bhatia S, Chattopadhyay D (2015) An advanced draft genome assembly of a desi type chickpea (Cicer arietinum┬аL.).┬аScientific Reports┬аDoi: 10.1038/srep12806.
Kumari S, Pundhir S, Priya P, Jeena G, Punetha A, Chawla K, Jafaree Z, Mondal S and┬аYadav G┬а(2014) EssOilDB: A database of essential oils reflecting terpene composition and variability in the plant kingdom.┬аDatabase┬а(Accepted) DOI: 10.1093/database/bau120
Misra G, Priya P, Bandhiwal N, Bareja N, Jain M, Bhatia S, Chattopadhyay D, Tyagi AK and┬аYadav G*┬а(2014) The Chickpea Genomic Web Resource: Visualization and Analysis of the Desi-type Cicer arietinum Nuclear Genome for Comparative Exploration of Legumes.┬аBMC Plant Biology.┬а14(1):┬а315
[Recommended by Faculty of 1000]┬аSchrick K, Bruno M, Khosla A, Roque RA, Nguyen H, Snyder MP, Singh D and┬аYadav G┬а(2014) Shared functions of plant and mammalian StAR-related lipid transfer (START) domains in modulating transcription factor activity.┬аBMC Biology. 12:70┬аdoi:10.1186/s12915-014-0070-8┬а(F1000Prime Recommendation)
Thakur JK, Yadav A and┬аYadav G*┬а(2014) Molecular recognition by the KIX domain and its role in gene regulation.┬аNucl. Acids Res. 42 (4):┬а2112-2125
Kumari S, Priya P, Misra G and┬аYadav G*┬а(2013) Structural and biochemical perspectives in plant isoprenoid biosynthesis.┬аPhytochemistry Reviews. 12:┬а255-291.
Jain M, Misra G, Patel RK, Priya P, Jhanwar S, Khan AW, Shah N, Singh VK, Garg R, Jeena G, Yadav M, Kant C, Sharma P,┬аYadav G, Bhatia S, Tyagi AK, Chattopadhyay D (2013) A draft genome sequence of the pulse crop chickpea (Cicer arietinum┬аL.).┬аPlant Journal. DOI: 10.1111/tpj.12173
Kumari R,┬аYadav G, Sharma V & Kumar S (2013) Cytosine hypomethylation at CHG and CHH sites in the pleiotropic mutants of Mendelian inheritance in┬аCatharanthus roseus.┬аJournal of Genetics 92(3):┬а499-511
Kumar S, Kumari R, Sharma V &┬аYadav G┬а(2013) Common and Distinguishing Characteristics of Genes and Genomes and Their Evolution in the Genome Sequenced Legumes.┬аProc Indian Natl Sci Acad. 79 (2):┬а277-286
Yadav G, Anand S and Mohanty D (2013) Prediction of inter domain interactions in modular polyketide synthases by docking and correlated mutation analysis.┬аJournal of Biomolecular Structure and Dynamics 31(1):┬а17-29.┬а(Spl Issue: Predictive biology using systems and integrative analysis and methods)
Yadav G*┬аand Babu S (2012) NEXCADE: Perturbation Analysis for Complex Networks.┬аPLoS ONE 7(8):┬аe41827. doi:10.1371/journal.pone.0041827
Kumari S, Shridhar S, Singh D, Farmer R, Hundal J, Priya P, Sharma P, Bhavishi K, Schrick K, and┬аYadav G*. (2012) The role of lectins and HD-ZIP transcription factors in Isoprenoid based plant stress responses┬аProc. Ind. Natl. Sci. Acad. 78 (4):┬а671-691┬а(Article in Cover Illustration)
Gaur R, Azam S, Jeena G, Khan AW, Chaudhary S, Jain M,┬аYadav G, Tyagi AK, Chattopadhyay D, Bhatia S (2012) High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum┬аL.).┬аDNA Research┬аpp:1-17 doi:10.1093/dnares/dss018
Chaudhary S, Sharma V, Prasad M, Bhatia S, Tripathi BN,┬аYadav G, Kumar S (2011) Characterization and genetic linkage mapping of the horticulturally important mutation leafless inflorescence (lli) in periwinkle┬аCatharanthus roseus.┬аSci. Horti. (in press) Doi: 10.1016/j.scienta.2011.02.025
Garg R, Patel RK, Jhanwar S, Priya P, Bhattacharjee A,┬аYadav G, Bhatia S et al (2011) Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development.┬аPlant Physiol 156:┬а1661-1678.
Anand S, Prasad MV,┬аYadav G, Kumar N, Shehara J et al.(2010) SBSPKS: structure based sequence analysis of polyketide synthases.┬аNucl. Acids. Res.┬а2010 May 5. [Epub ahead of print]
Kumar S, Mishra RK, Chaudhary S, Pandey R and┬аYadav G┬а(2009) Co-regulation of Biomass Partitioning by Leafblade Morphology Genes Afila, Multifoliate-pinna, Tendril-less and Unifoliata in Grain Pea┬аPisum sativum.┬аProc. Ind. Natl. Sc. Acad, 75┬аNo. 1 pp 15-25.
Shridhar S, Chattopadhyay D, and Yadav G* (2009) PLecDom: A program for identification and analysis of plant Lectin Domains.┬аNucl. Acids. Res. Jul 1;37: W452-8. Epub 2009 May 27 (*corresponding author).
Yadav G*, Prasad RLA, Jha BK, Rai V, Bhakuni VK and Datta K (2008). Evidence for inhibitory interaction of hyaluronan binding protein 1 (HABP1/p32/gC1qR) with S. pneumoniae hyaluronidase.┬аJ. Biol. Chem 284(6): 3897-3905 (*corresponding author).
Kaur H, Shukla RK, Yadav G, Chattopadhyay D and Majee M (2008) Two divergent genes encoding L-myo-inositol 1 -phosphate synthase1 (CaMIPS1) and 2 (CaMIPS2) are differentially expressed in chickpea.┬аPlant, Cell and Environment 31: 1701-1716.
Chopra T, Banerjee S, Gupta S, Yadav G, Anand S, et al. (2008) Novel Intermolecular Iterative Mechanism for Biosynthesis of Mycoketide Catalyzed by a Bimodular Polyketide Synthase.┬аPLoS Biology: 6(7):┬аe163 doi:10.1371/journal.pbio.0060163.