Session I: Integrative omics & system biology (11:25 hrs. - 12:30 hrs.) |
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11:25 - 11:50 |
Integrated Metabolomics for Deciphering Metabolic Pathways and Emerging Solutions for Addressing the Grand Challenges of Metabolomics |
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11:50 – 12:10 |
Understanding immune signaling in plant: a system biology approach |
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12:10 – 12:25 |
Jin Koh |
Integrative omics of Tragopogon polyploidy and evolution |
12:25 – 12:30 |
Divya Rathi |
Remodeling of the transcriptome, proteome and metabolome of Grasspea: The molecular basis of the dehydration tolerance |
12:30 -13:10 |
Poster session |
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13:10 -13:55 |
Lunch |
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Session II: Model/unique organism proteomics (13:55 hrs. - 16:55 hrs.) |
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13:55-14:20 |
Label free and TMT proteomic analysis of two different rice varieties with contrasting drought tolerance phenotypes |
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14:20–14:45 |
Host genetics influence the virulence of E. coli pathogens by altering glycan anchors in the gut epithelium. |
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14:45–15:05 |
Complex responses of glycosylphosphatidylinositol (GPI)-anchored proteins in association with plant cold acclimation |
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15:05–15:25 |
Proteomics of a Himalayan shrub a step towards Translational Research |
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15:25–15:45 |
Decoding the role of diazotrophic cyanobacterial AhpC in abiotic stress management using proteomics and genomics approaches |
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| 15:45–16:05 | Shree Kumar Apte | Proteomic approaches unveil some secrets of the extreme radiation resistance in Deinococcus rodiodurans |
16:05–16:25 |
The Omics Discovery Index |
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16:25-16:40 |
Proteomic analysis in Caenorhabditis elegans challenges with Klebsiella pneumoniae revealed the regulation of TOR pathway against infection | |
16:40 – 16:50 |
M.V. Jagannadham |
Proteomic analysis of the outer membrane Vesicles (Omvs) of an Archebacterium Natronicoccus Sp., whose genome sequences is not known. |
16:50-16:55 |
Roshan Kumar |
Global S-nitrosoproteome identification links UCHL1 to Parkinson disease pathology |
16:55 -17:10 |
Exhibition & Tea/Coffee |
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Session III: Interaction proteomics & cellular network (17:10 hrs. - 18:35 hrs.) |
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17:100-17:35 |
Chemical crosslinking mass spectrometry of protein complexes using cleavable crosslinkers: Establishing quantitative connectivity diagrams. |
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17:35-18:00 |
The Role of Interaction Codes in Protein Interaction Networks |
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18:40–18:20 |
Integrating the role of FOXP3-interactomics in IL10 transcription in tumor T-regulatory Cells |
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18:20–18:35 |
Kenneth J. Oh |
Activation of p53 in Down Syndrome and in the Ts65Dn mouse brain is associated with a pro-apoptotic phenotype |
Session IV: Immunity, disease proteomics in animal & plant healthcare (9:35 hrs. - 12:15 hrs.) |
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9:35 - 10:00 |
Direct conversion of stem cells by changing single protein dynamics |
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10:00 - 10:25 |
Comparative proteomics of human fungal pathogens |
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10:25 - 10:45 |
Proteomics Study of Protein Methylation in Plasmodium falciparumat asexual blood stages |
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10:45 - 11:15 |
Exhibition & Tea / Coffee |
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11:15 - 11:35 |
Proteogenomic approaches for biomarker discovery |
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11:35 - 11:55 |
Development of redox proteomics technologies and application in stomatal guard cell immunity research |
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11:55 - 12:15 |
Platelet proteomics in blood disorder |
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12:15 - 12:20 |
Sudip Ghosh |
Proteometabolomic study illustrates dual role of oxalic acid in anti-nutrient signaling and non-host resistance |
12:20 - 12:25 |
Pooja |
Plasma proteome signatures for short-term and long-term acclimatization at high altitude |
12:25 - 13:05 |
Poster session |
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13:05 - 13:45 |
Lunch |
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Session V: Global & targeted proteomics for precision medicine (13:45 hrs. - 15:55 hrs.) |
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13:45 - 14:10 |
Discovery and Development of Multiplexed Protein Biomarker Tests to Support Clinical Decision Making |
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14:10 - 14:35 |
Changing medicine: Proteome centric precision health |
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14:35 - 14:55 |
Applying proteomics to develop a precise, predictive test for diabetic kidney disease |
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14:55 - 15:10 |
Targeted Proteomics for the validation of biomarkers in Brain Tumors |
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15:10 - 15:25 |
Quantification and validation of potential biosignatures for intrinsic subtypes of breast cancer |
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15:25 - 15:40 |
Satya Saxena |
Proteomic Analysis of Treatment-Naïve Early RA Serum Identifies a Unique Protein Signature and Reveals Upregulation of Platelet Activation and Degranulation Pathways |
15:40 - 15:55 |
Industrialization of quantitative proteomics measurements by SWATH-MS |
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15:55 - 16:25 |
Exhibition & Tea/Coffee |
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Session VI: Proteogenomics & big data analysis (16:25 hrs. - 17:20 hrs.) |
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16:25 - 16:45 |
Rapid analysis of Chemical cross linking data with Kojak |
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16:45 - 17:00 |
Jim Thorn (SCIEX Industry Talk) |
Analysis of Post Translational Modifications using CESI-MS |
17:00 - 17:15 |
Thomas Klemm (Illumina Industry Talk) |
Unlocking the Power of the Genome with Multi-Omics data and the Illumina Correlation Engine |
17:15 - 17:20 |
Puneet K. Kadimi |
A Browser-based Interactive Dashboard for Exploratory Analysis of MS-based Proteomics data |
Session VII: Structural proteomics (9:35 hrs. - 11:25 hrs.) |
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9:35 - 10:00 |
Bacterial Transcriptional Activators: Protein Mechanics of their Activity |
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10:00 - 10:25 |
Structural proteomics of plant seeds |
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10:25 - 10:45 |
Exhibition & Tea/Coffee |
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10:45 - 11:05 |
From Proteins to Climate Change: Redox Proteomics in Plant Metabolism |
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11:05 - 11:25 |
Temperature-specific expansion of Dengue virus by mass spectrometry uncovers capsid quaternary interactions |
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Session VIII: Organ & organeller proteomics (11:25 hrs. - 15:05 hrs.) |
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11:25 - 11:50 |
Plant proteomics, with a special focus on seeds |
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11:50 - 12:10 |
Profiling glycopeptides by HCD and ETD to characterize the plant Golgi localized UDP-GlcNAc transporter |
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12:10 - 12:30 |
Proteomic analysis of the plant extracellular matrix: turning protein repertoire into application for crop improvement |
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12:30 - 13:00 |
Poster session |
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13:00 - 13:30 |
Lunch |
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13:30 - 13:50 |
Chloroplast Protein Homeostasis; protein maturation and degradation |
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13:50 - 14:10 |
Dynamics of proteome during development and ageing |
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14:10 - 14:30 |
The quest for protein markers in oil palm tissue culture |
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14:30 - 14:50 |
Discovery and validation of protein biomarkers for lung cancer metastasis using a cell secretome model and clinical specimens |
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14:50 - 15:05 |
Protein degradation rate in Arabidopsis thaliana leaf growth and development |
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15:05 - 15:25 |
Exhibition & Tea / Coffee |
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Session IX: Metabolomics & metabolic disorders (15:25 hrs. - 17:40 hrs.) |
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15:25 - 15:50 |
Metabolomics in a fix: Tomato genotypes reveal ecosystem-dependent and hormone-specific fluidity |
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15:50 - 16:10 |
Identifying potential markers for Coronary Artery Disease using Proteomics and Metabolomics approach |
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16:10 - 16:30 |
Global metabolomic profiling reveal triggers for sexual stage conversion in Malaria |
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16:30 - 16:50 |
Deregulated metabolic phenotype of pulmonary tuberculosis patients |
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16:50 - 17:10 |
Omics' analysis of leaf from Clematis terniflora DC. under binary stress |
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17:10 - 17:25 |
Lee Gethings (Waters Industry Talk) |
Unbiased quantitative and qualitative metabolic profiling for translational medicine |
17:25 - 17:40 |
T. More |
Comprehensive quantitative metabolomics approach to investigate metabolic alteration in invasive Ductal Carcinoma of the breast |
18:00-19:00 |
AOAPO-Council Meeting |
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Session X: Food, nutrition and stress omics (9:35 hrs. - 13:20 hrs.) |
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9:35 - 10:00 |
Quest for phosphosignaling pathways in ABA response in plants |
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10:00 - 10:20 |
Harnessing the Wheat Proteome to Enhance Yield, Salinity Tolerance and Thermal Tolerance |
|
10:20 - 10:40 |
Salinity-Induced Palmella Formation Mechanism in Dunaliellasalina Revealed from Quantitative Proteomics and Phosphoproteomics Analysis |
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10:40 - 11:15 |
Exhibition & Tea/Coffee |
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11:15 - 11:35 |
Quantitative proteomics reveals an important role of GsCBRLK in salt stress response of soybean |
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11:35 - 11:55 |
Mechanistic insight into the involvement of glutathione in plant defence: a proteomic approach |
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11:55 - 12:15 |
Application of Proteomics in Agricultural Research & Development: A South African Perspective |
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12:15 - 12:35 |
A. K. Mohanty | Discovery of protein biomarkers in biofluids of bovine for early detection of pregnancy for sustained productivity |
12:35 - 12:50 |
Hariprasad G | Differential protein expression profiling as means to explain beneficial advantages of co-administering growth factor cocktailwith cardiac stem cells for regenerative therapy |
12:50 - 12:55 |
Swati Varshney |
Effect of vitamin B12 restriction on Wistar rat: A global proteomic profiling |
12:55 - 13:00 |
Shivam Dubey |
iTRAQ based comparative proteome profiling of A1A1, A2A2 and A1A2 beta casein variants of cow milk |
13:00 - 14:00 |
Lunch |
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Session XI: PTM proteomics & regulation biology (14:00 hrs. - 16:25 hrs.) |
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14:00 - 14:25 |
Clinical Proteomics – Let's not Forget the PTMs |
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14:25 - 14:45 |
S Gopalan Sampathkumar | Glycoproteomics analysis enabled by hexosamine analogues through metabolic glycan engineering |
14:45 - 15:05 |
Glycation inhibitors reduce protein glycation and extend chronological life span of Saccharomyces cerevisiae and Caenorhabditis elegans |
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15:05 - 15:25 |
Proteomic exploration of lysine acetylation and ubiquitylation |
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15:25 - 15:45 |
Mapping molecular changes associated with tobacco induced cellular transformation by global and phosphoproteomic profiling |
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15:45 - 16:05 |
Quantitative proteomics and phosphoproteomics of sugar beet monosomic addition line M14 in response to salt stress |
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16:05 - 16:20 |
Characterization of SnRK2.6 and its phosphorylation substrates |
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16:20 - 16:25 |
Vandita Dwivedi |
Glycoproteomics based analysis of site occupancy and microheterogeneity of Mucin-type-O-Glycans on CD43 |
Session XII: Human proteome project initiatives (16:25 hrs. - 17:30 hrs.) |
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16:25 - 16:50 |
The HPP Knowledge Base Pillar: Achieving a high-confidence snapshot of the human proteome observed thus far |
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16:50 - 17:10 |
Ravi Sirdeshmukh | Chromosome Centric Human Proteome Project and the Indian Efforts |
17:10 – 17:30 |
Probing the missing Proteome: a computational approach |
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17:30 - 18.00 |
Closing program |
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18:00 - 18:30 |
High Tea/Coffee |
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Abhijit Chakraborty –Saha Institute of Nuclear Physics, India
- Topic : Platelet proteomics in blood disorder
- Date : Thursday, December 15, 2016
- Time : 11:55-12:15
AK. Mohanty – National Dairy Research Institute, India
- Topic : Discovery of protein biomarkers in biofluids of bovine for early detection of pregnancy for sustained productivity
- Date : Saturday, December 17, 2016
- Time : 12:35-12:55
Autar Mattoo– USDA, USA
- Topic : Metabolomics in a fix: Tomato genotypes reveal ecosystem-dependent and hormone-specific fluidity
- Date : Friday, December 16, 2016
- Time : 16:40-17:00
Bing Yu – Heilongjiang University, China
- Topic : Omics analysis of leaf from Clematis terniflora DC. under binary stress
- Date : Friday, December 16, 2016
- Time : 18:00-18:15
Bongani Ndimba– Agricultural Research Council, South Africa
- Topic : Application of Proteomics in Agricultural Research & Development: A South African Perspective
- Date : Saturday, December 17, 2016
- Time : 12:15-12:35
Bonghee Lee –Gachon University, Korea
- Topic : Direct conversion of stem cells by changing single protein dynamics
- Date : Thursday, December 15, 2016
- Time : 9:35-10:00
Chin Chiew Foan– The University of Nottingham, Malaysia
- Topic : The quest for protein markers in oil palm tissue culture
- Date : Friday, December 16, 2016
- Time : 14:50-15:10
Chunaram Chaudhary – University of Copenhagen, Denmark
- Topic : Proteomic exploration of lysine acetylation and ubiquitylation
- Date : Saturday, December 17, 2016
- Time : 15:45-16:05
David E. Wemmer – University of California, Berkley, USA
- Topic : Bacterial Transcriptional Activators: Protein Mechanics of their Activity
- Date : Friday, December 16, 2016
- Time : 9:35-10:00
Debashish-Dash - CSIR-Institute of Genomics and Integrative Biology, India
- Topic : Probing the missing Proteome: a computational approach
- Date : Saturday, December 17, 2016
- Time : 17:45-18:05
Dinakar Salunke – International Centre for Genetic Engineering and Biotechnology, India
- Topic : Structural proteomics of plant seeds
- Date : Friday, December 16, 2016
- Time : 10:00-10:25
Dominique Job - CNRS Bayer Crop Science Joint Laboratory, France
- Topic : Plant proteomics, with a special focus on seeds
- Date : Friday, December 16, 2016
- Time : 11:35-12:00
Emoke Bendixen–Aarhus University, Denmark
- Topic : Host genetics influence the virulence of E. coli pathogens by altering glycan anchors in the gut epithelium
- Date : Wednesday, December 14, 2016
- Time : 14:20–14:45
Eric Deutsch -Institute for System Biology, USA
- Topic : The HPP Knowledge Base Pillar: Achieving a high-confidence snapshot of the human proteome observed thus far
- Date : Saturday, December 17, 2016
- Time : 17:00-17:25
Ganesh Anand– National University of Singapore
- Topic : Temperature-specific expansion of Dengue virus by mass spectrometry uncovers capsid quaternary interactions
- Date : Friday, December 16, 2016
- Time : 11:15 - 11:35
Gaurisankar Sa – Bose Institute, India
- Topic : Integrating the role of FOXP3-interactomics in IL10 transcription in tumor T-regulatory Cells
- Date : Wednesday, December 14, 2016
- Time : 17:40–18:00
Hanno Steen - Harvard Medical School & Children's Hospital Boston, USA
- Topic : Clinical Proteomics – Let's not Forget the PTMs
- Date : 14:40-15:05
- Time : Saturday, December 17, 2016
Hariprasad G- All India Institute of Medical Sciences, India
- Topic : Differential protein expression profiling as means to explain beneficial advantages of co-administering growth factor cocktailwith cardiac stem cells for regenerative therapy
- Date : Saturday, December 17, 2016
- Time : 12:55-13:10
Harsha Gowda - Institute of Bioinformatics, India
- Topic : Mapping molecular changes associated with tobacco induced cellular transformation by global and phosphoproteomic profiling
- Date : Saturday, December 17, 2016
- Time : 16:05-16:25
Henning Hermjakob–European Bioinformatics Institute
- Topic : The Omics Discovery Index
- Date : Wednesday, December 14, 2016
- Time : 15:45–16:05
Hosseini Salekdeh– Agricultural Biotechnology Research Institute, Iran
- Topic : TBA
- Date : Saturday, December 17, 2016
- Time : 9:35-10:00
Jennifer Van Eyk - Cedars-Sinai Medical Center, USA
- Topic : Changing medicine: Proteome centric precision health
- Date : Thursday, December 15, 2016
- Time : 14:10-14:35
JinKoh - University of Florida, USA
- Topic : Integrative omics of Tragopogon polyploidy and evolution
- Date : Wednesday, December 14, 2016
- Time : 12:10 – 12:25
Joseph Jez –Washington University, USA
- Topic : From Proteins to Climate Change: Redox Proteomics in Plant Metabolism
- Date : Friday, December 16, 2016
- Time : 10:55 - 11:15
Joshua Hazlewood - The University of Melbourne, Australia
- Topic : Profiling glycopeptides by HCD and ETD to characterize the plant Golgi localized UDP-GlcNAc transporter
- Date : Friday, December 16, 2016
- Time : 12:00-12:20
K.Dharmalingam – Aravind Eye Care System, India
- Topic : Comparative proteomics of human fungal pathogens
- Date : Thursday, December 15, 2016
- Time : 10:00-10:25
Klaas Van Wijk - Cornell University, USA
- Topic : Chloroplast Protein Homeostasis; protein maturation and degradation
- Date : Friday, December 16, 2016
- Time : 14:10-14:30
Krishna Swamy Balamurugan
- Topic : Proteomic analysis in Caenorhabditis elegans challenges with Klebsiella pneumoniae revealed the regulation of TOR pathway against infection
- Date : Wednesday, December 14, 2016
- Time : 16:05-16:20
L. C. Rai - Banaras Hindu University, India
- Topic : Decoding the role of diazotrophic cyanobacterial AhpC in abiotic stress management using proteomics and genomics approaches
- Date : Wednesday, December 14, 2016
- Time : 15:25–15:45
Lloyd Sumner - University of Missouri, USA
- Topic : Integrated Metabolomics for Deciphering Metabolic Pathways and Emerging Solutions for Addressing the Grand Challenges of Metabolomics
- Date : Wednesday, December 14, 2016
- Time : 11:25 - 11:50 5
Lei Li – ARC Centre of Excellence, Australia
- Topic : Protein degradation rate in Arabidopsis thaliana leaf growth and development
- Date : Friday, December 16, 2016
- Time : 15:30-15:45
Mahesh J. Kulkarni - CSIR-National Chemical Laboratory, India
- Topic : Glycation inhibitors reduce protein glycation and extend chronological life span of Saccharomyces cerevisiae and Caenorhabditis elegans
- Date : Saturday, December 17, 2016
- Time : 15:25-15:45
Marc Wilkins - University of New South Wales, Australia
- Topic : The Role of Interaction Codes in Protein Interaction Networks
- Date : Wednesday, December 14, 2016
- Time : 17:15-17:40
Michael Hoopmann - Institute for System Biology, USA
- Topic : Rapid analysis of Chemical cross linking data with Kojak
- Date : Thursday, December 15, 2016
- Time : 16:25-16:45
Mukul Midha–Institute for System Biology, USA
- Topic : Industrialization of quantitative proteomics measurements by SWATH-MS
- Date : Thursday, December 15, 2016
- Time : 15:25-15:40
Nicolas Taylor – The University of Western Australia, Australia
- Topic : Harnessing the Wheat Proteome to Enhance Yield, Salinity Tolerance and Thermal Tolerance
- Date : Saturday, December 17, 2016
- Time : 10:25-10:45
Niranjan Chakraborty -National Institute of Plant Genome Research, India
- Topic : Proteomic analysis of the plant extracellular matrix: turning protein repertoire into application for crop improvement
- Date : Friday, December 16, 2016
- Time : 12:20-12:40
Pao-Chi Liao – National Cheng Kung University, Taiwan
- Topic : Discovery and validation of protein biomarkers for lung cancer metastasis using a cell secretome model and clinical specimens
- Date : Friday, December 16, 2016
- Time : 15:10-15:30
Paul Haynes - Macquarie University, Australia
- Topic : Label free and TMT proteomic analysis of two different rice varieties with contrasting drought tolerance phenotypes
- Date : Wednesday, December 14, 2016
- Time : 13:55-14:20
Pawan Malhotra -International Centre for Genetic Engineering and Biotechnology, India
- Topic : Proteomics Study of Protein Methylation in Plasmodium falciparumat asexual blood stages
- Date : Thursday, December 15, 2016
- Time : 10:25-10:45
Philip Andrews
- Topic : Chemical crosslinking mass spectrometry of protein complexes using cleavable crosslinkers: Establishing quantitative connectivity diagrams.
- Date : Wednesday, December 14, 2016
- Time : 16:50-17:15
Rakesh Mishra - CSIR-Centre for Cellular and Molecular Biology, India
- Topic : Dynamics of proteome during development and ageing
- Date : Friday, December 16, 2016
- Time : 14:30-14:50
Ranjan Nanda -International Centre for Genetic Engineering and Biotechnology, India
- Topic : Deregulated metabolic phenotype of pulmonary tuberculosis patients
- Date : Friday, December 16, 2016
- Time : 17:40-18:00
Ravi Sirdeshmukh - Institute of Bioinformatics, India
- Topic : TBA
- Date : Saturday, December 17, 2016
- Time : 17:25-17:45
Renu Deswal - University of Delhi, India
- Topic : Proteomics of a Himalayan shrub a step towards Translational Research
- Date :
- Time : 15:05–15:25
Richard Lipscombe –Proteomics International, Australia
- Topic : Applying proteomics to develop a precise, predictive test for diabetic kidney disease
- Date : Thursday, December 15, 2016
- Time : 14:35-14:55
Robert L. Moritz - Institute for System Biology, USA
- Topic : Proteogenomic approaches for biomarker discovery
- Date : Thursday, December 15, 2016
- Time : 11:15-11:35
Sanjeeva Srivastava –Indian Institute of Technology, Mumbai
- Topic : Targeted Proteomics for the validation of biomarkers in Brain Tumors
- Date : Thursday, December 15, 2016
- Time : 15:10-15:25
S Gopalan Sampath kumar - National Institute of Immunology, India
- Topic : Glycoproteomics analysis enabled by hexosamine analogues through metabolic glycan engineering
- Date : Saturday, December 17, 2016
- Time : 15:05-15:25
Shantanu Sengupta - CSIR-Institute of Genomics and Integrative Biology, India
- Topic : Identifying potential markers for Coronary Artery Disease using Proteomics and Metabolomics approach
- Date : Friday, December 16, 2016
- Time : 17:00-17:20
Shaojun Dai –Shanghai Normal University, China
- Topic : Salinity-Induced Palmella Formation Mechanism in Dunaliellasalina Revealed from Quantitative Proteomics and Phosphoproteomics Analysis
- Date : Saturday, December 17, 2016
- Time : 11:15-11:35
Sharmila Chattopadhyay – CSIR-Indian Institute of Chemical Biology, India
- Topic : Mechanistic insight into the involvement of glutathione in plant defence: a proteomic approach
- Date : Saturday, December 17, 2016
- Time : 11:55-12:15
Sixue Chen - University of Florida, USA
- Topic : Development of redox proteomics technologies and application in stomatal guard cell immunity research
- Date : Thursday, December 15, 2016
- Time : 11:35-11:55
Srikant Rapole - National Centre for Cell Science, India
- Topic : Quantification and validation of potential biosignatures for intrinsic subtypes of breast cancer
- Date : Thursday, December 15, 2016
- Time : 14:55-15:10
Stephen Pennington – Conway Institute, Dublin
- Topic : Discovery and Development of Multiplexed Protein Biomarker Tests to Support Clinical Decision Making
- Date : Thursday, December 15, 2016
- Time : 13:45-14:10
Subhra Chakraborty - National Institute of Plant Genome Research, India
- Topic : Understanding immune signaling in plant: a system biology approach
- Date : Wednesday, December 14, 2016
- Time : 11:50 – 12:10
Susan Sumner - College of Agriculture and Life Sciences, USA
- Topic : Metabolomics in maternal and child health
- Date : Friday, December 16, 2016
- Time : 16:15-16:40
Taishi Umezawa – Tokyo University of Agriculture and Technology, Japan
- Topic : Quest for phosphosignaling pathways in ABA response in plants
- Date : Saturday, December 17, 2016
- Time : 10:00-10:25
Tianyi Ma – Qiqihaer University, China
- Topic : Characterization of SnRK2.6 and its phosphorylation substrates
- Date : Saturday, December 17, 2016
- Time : 16:45-17:00
Uemura Matsuo –Iwate University Faculty of Agriculture, Japan
- Topic : Complex responses of glycosylphosphatidylinositol (GPI)-anchored proteins in association with plant cold acclimation
- Date : Wednesday, December 14, 2016
- Time : 14:45–15:05
Utpal S. Tatu - Indian Institute of Science, India
- Topic : Global metabolomic profiling reveal triggers for sexual stage conversion in Malaria
- Date : Friday, December 16, 2016
- Time : 17:20-17:40
Wei Ji – Northeast Agricultural University, China
- Topic : Quantitative proteomics reveals an important role of GsCBRLK in salt stress response of soybean
- Date : Saturday, December 17, 2016
- Time : 11:35-11:55