Dr. Saloni Mathur
Staff Scientist V
- 91-11-26741612/14/17 Ext. 175, 91-11-26735175, Fax: 91-11-26741658
- saloni@nipgr.ac.in
Profile
Research Area
Plant regulatory biology, high throughput genomics, bioinformatics.
Research Interests
Globally the rate of climate warming has averaged twice over the last 50 years than that of last 100 years. The mean air temperature is predicted to rise by up to 4oC by the end of this century. Higher temperatures negatively impact agriculture directly both in terms of yield and quality. In tomato, increased temperatures have been shown to significantly disturb microsporogenesis and megasporogenesis that result in substantial decrease in fruit set. Our group is interested in understanding the molecular mechanisms underlying plant response to harsh environment such as heat stress. In particular, the upstream factors regulating the known heat shock responsive genes is currently not well understood. MicroRNAs form one such class of small regulatory molecules with potential to control these genes. The idea is to identify and characterize heat-responsive miRNAs in tomato and dissect out the regulatory networks that are responsive to heat stress. This would provide clues to better understand stress signaling and heat tolerance. This feat will be achieved by adopting a global approach by comparative analysis of the modulation of miRNA expressions in contrasting tomato cultivars during different stages of plant development with special emphasis on flower and fruit development. The long-term goal of the lab is to elucidate the miRNA networks and identify key genes instrumental in regulating response to heat stress. These key regulators can then be manipulated to engineer for the better survival, yield as well as quality potential of tomato and other related crop plants.
Career
Scientist III (April 2013 – present):┬аNIPGR.
Research Scientist (2011-2013):┬аInterdisciplinary Centre for Plant Genomics, Delhi University South Campus.
Research Scientist (2005-2011):┬аDepartment of Plant Molecular Biology, Delhi University South Campus.
Ph. D. (1999-2005):┬аDepartment of Plant Molecular Biology, Delhi University South Campus.
M. Sc. (1997-1999):┬аDepartment of Plant Molecular Biology, Delhi University South Campus.
B. Sc. (Botany- Honors, 1994-1997):┬аGargi College, Delhi University.
Awards & Honors
Year
Awards/Scholarships
2013
SERB 'Women Excellence Award' by Science and Engineering Research Board (SERB), India.
2008
Young Scientist Platinum Jubilee Award in Biological Sciences by National Academy of Sciences, India (NASI).
1999-04
Junior and Senior Research fellowships from CSIR.
1999
The Graduate Aptitude Test in Engineering (GATE).
AWARD-98 awarded by Delhi University Student's Union.
1997
University Gold Medal in B. Sc. Botany honors, awarded by Delhi University.
1997
Pratibha Mukherjee Memorial award, awarded by Gargi College Delhi University.
Current Members
Chandni Bansal
Ph. D. Student
Jaishri Rubina Das
Ph. D. Student
Apoorva Gupta
Ph. D. Student
Monika Shrivastava
Ph.D. Student
Adesh Kumar
Ph. D. Student
Publications
Bansal, C., Kumar, A., Shrivastava, M. and┬аMathur, S.,┬а(2024). Functional diversification of miR172 isoforms in tomato under abiotic stress.┬аEnvironmental and Experimental Botany, p.105696.
Gupta, A., Ghosh, D., Rao, S. and┬аMathur, S.,┬а(2024). Deciphering the role of MIR169d: NF-YA2 module under individual as well as combined drought and heat stress in Arabidopsis.┬аPlant Physiology Reports, pp.1-12.
Das, J.R. and┬аMathur, S.,┬а(2023). HSFA1a: the quarterback of heat stress response and 3D-chromatin organization.┬аTrends in Plant Science
Rao S, Gupta A, Bansal C, Sorin C, Crespi M and┬аMathur S. (2022)┬аA conserved HSF:miR169:NF-YA loop involved in tomato and Arabidopsis heat stress tolerance.┬аThe Plant Journal┬а112(1): 7-26.
Rao S, Balyan S, Bansal C,┬аMathur S. (2022)┬аAn integrated bioinformatics and functional approach for miRNA validation In┬аPlant Gene Silencing┬а2022 (pp. 253-281). Humana, New York, NY
Rao S, Das JR, Balyan, S, Verma R,┬аMathur S. (2022)┬аCultivar-biased regulation of HSFA7 and HSFB4a govern high temperature tolerance in tomato.┬аPlanta┬а255(2):1-18.
Gour P, Kansal S, Agarwal P, Mishra BS, Sharma D,┬аMathur S, Raghuvanshi S┬а(2022)┬аVariety-specific transcript accumulation during reproductive stage drought stress in rice.┬аPhysiologia Plantarum┬а174(1): pe13585.
Rao, S., Balyan, S., Bansal, C. and┬аMathur, S., (2022). An Integrated Bioinformatics and Functional Approach for miRNA Validation. In Plant Gene Silencing: Methods and Protocols (pp. 253-281). New York, NY: Springer US.
Sharma P, Goudar G, Kumar AC, Ananthan R, Subhash K, Chauhan A, Longvah T, Singh M, Bhardwaj R, Parida SK, Singh AK, Gayacharan,┬аChattopadhyay D┬а(2023) Assessment of diversity in anti-nutrient profile, resistant starch, minerals and carbohydrate components in different ricebean (Vigna umbellata) accessions.┬аFood Chemistry┬а405 (Pt A):134835 doi:10.1016/j.foodchem.2022.134835
Rao S, Das JR,┬аMathur, S. (2021). Exploring the master regulator heat stress transcription factor HSFA1a-mediated transcriptional cascade of HSFs in the heat stress response of tomato.┬аJournal of Plant Biochemistry and Biotechnology, 30(4) 862-877.
Bansal C, Balyan S,┬аMathur S. (2021)┬аInferring the regulatory network of the miRNA-mediated response to individual and combined heat and drought stress in tomato.┬аJournal of Plant Biochemistry and Biotechnology┬а30(4) 878-888.
Parida AP, Srivastava A,┬аMathur S, Sharma AK, Kumar R.┬а(2021)┬аIdentification, evolutionary profiling, and expression analysis of F-box superfamily genes under phosphate deficiency in tomato.┬аPlant Physiology and Biochemistry.162:349-62.
Balyan S, Rao S, Jha S, Bansal C, Das JR and┬аMathur S (2020). Characterization of novel regulators for heat stress tolerance in tomato from Indian sub-continent.┬аPlant Biotechnology Journal┬а18(10), p. 2118.
Rao S, Balyan S, Jha S and┬аMathur S (2020)┬аNovel insights into expansion and functional diversification of MIR169 family in tomato.┬аPlanta, 251(2):55.
Rao S, Balyan S, Jha S, Bansal C, Das JR, Gupta A,┬аMathur S. (2020)┬аOrchestration of MicroRNAs and Transcription Factors in the Regulation of Plant Abiotic Stress Response. In Plant Stress Biology (pp. 251-277). Springer, Singapore.
Pandey S, Muthamilarasan M, Sharma N, Chaudhry V, Dulani P, Shweta, Jha S,┬аMathur S, Prasad M.┬а(2019)┬аCharacterization of DEAD-box family of RNA helicases in tomato provides insights into their roles in biotic and abiotic stresses.┬аEnvironmental and Experimental Botany, 158:107-116.
International Wheat Genome Sequencing Consortium┬а(2018)┬аShifting the limits in wheat research and breeding using a fully annotated reference genome.┬аScience, 361(6403): eaar7191.
Sahu KK,┬аChattopadhyay D┬а(2017) Genome-wide sequence variations between wild and cultivated tomato species revisited by whole genome sequence mapping.┬аBMC Genomics┬а18:430
Balyan S, Kumar M, Mutum R, Raghuvanshi U, Agarwal P,┬аMathur S, and Raghuvanshi S.┬а(2017)┬аIdentification of miRNA-mediated drought responsive multi-tiered regulatory network in drought tolerant rice, Nagina 22.┬аScientific Reports┬а7: 15446.
Paul A, Rao S,┬аMathur S. (2016)┬аThe a-Crystallin Domain Containing Genes: Identification, Phylogeny and Expression Profiling in Abiotic Stress, Phytohormone Response and Development in Tomato (Solanum lycopersicum).┬аFrontiers in Plant Science, 7:426
Mutum R, Kumar S, Balyan S, Kansal S,┬аMathur S, and Raghuvanshi S.┬а(2016)┬аIdentification of novel miRNAs from drought tolerant rice variety Nagina 22.┬аScientific Reports, 6:30786.
Jaiswal V, Gahlaut V,┬аMathur S, Agarwal P, Khandelwal MK, Khurana JP, Tyagi AK, Balyan HS and Gupta PK.┬а(2015)┬аIdentification of novel SNP in promoter sequence of TaGX2-GA associated with grain weight and other agronomic traits in wheat (Triticum aestivum L.).┬аPLOS One, 10(6): e0129400.
Kansal S, Mutum RD, Balyan SC, Arora MK, Singh AK,┬аMathur S, Raghuvanshi S.┬а(2015)┬аUnique miRNome during anthesis in drought-tolerant indica rice var. Nagina 22.┬аPlanta, 241(6):1543-1559.
Balyan SC, Mutum RD, Kansal S, Kumar S,┬аMathur S┬аand Raghuvanshi S.┬а(2015)┬аInsights into the small RNA mediated networks in response to abiotic stress in plants. In: Pandey GK (ed), Elucidation of Abiotic Stress Signaling in Plants. Springer Science, New York, USA : pp 45-91
Dhariwal R, Gahlaut V, Govindraj BR, Singh D,┬аMathur S, Vyas S, Bandopadhyay R, Khurana JP, Tyagi AK, Prabhu KV, Mukhopadhyay K, Balyan HS, and Gupta PK.┬а(2015)┬аStage-specific reprogramming of gene expression characterizes Lr48-mediated adult plant leaf rust resistance in wheat.┬аFunct. Integr. Genomics, 15(2):233-245.
Gahlaut V,┬аMathur S, Dhariwal R, Khurana JP, Tyagi AK, Balyan HS, and Gupta PK.┬а(2014)┬аA multi-step phosphorelay two-component system impacts on tolerance against dehydration stress in common wheat.┬аFunct. Integr. Genomics, 14(4):707-716.
Mathur S, and Dasgupta I┬а(2013)┬аFurther support of genetic conservation in Indian isolates of Rice tungro bacilliform virus by sequence analysis of an isolate from north-western India.┬аVirus Genes, 46(2): 387-391.
Saloni Mathur, Shailendra Vyas, Amolkumar U. Solanke, Rahul Kumar, Vikrant Gupta, Arun K. Sharma, Paramjit Khurana, Jiten Khurana, Akhilesh Tyagi, (The Tomato Genome Consortium, the list of authors from UDSC)┬а(2012). The tomato genome sequence provides insights into fleshy fruit evolution.┬аNature, 485(7400), 635-641.
Shailly Anand, Naseer Sangwan, Pushp Lata, Jasvinder kaur, Ankita Dua, Amit Singh, Mansi Verma, Jaspreet Kaur, Jitendra Khurana, Paramjit Khurana,┬аSaloni Mathur, Rup Lal.┬а(2012). Genome Sequence of Sphingobium indicum B90A, a Hexachlorocyclohexane (HCH) Degrading Bacterium.┬аJournal of Bacteriology, 194(16), 4471-4472.
Mathur S,Vyas S, Kapoor S, Tyagi AK┬а(2011). The mediator complex in plants: structure, phylogeny and expression profiling of representative genes in a dicot (Arabidopsis) and a monocot (Rice) during reproduction and abiotic stress.┬аPlant Physiology, 157(4), 1609-1627.
Purkayastha A,┬аMathur S, Verma V, Sharma S and Dasgupta I.┬а(2010). Virus-induced Gene Silencing in rice using a vector derived from a DNA virus.┬аPlanta, 232(6):1531-1540.
Saloni Mathur, Shailendra Vyas, Amolkumar U. Solanke, ….., Nagendra Kumar Singh (The Tomato Genome Sequencing Consortium, the list of Indian authors)┬а(2009). A snapshot of the emerging tomato genome sequence.┬аThe Plant Genome, 2, 78-92.
Vikrant Gupta,┬аSaloni Mathur, Amolkumar U. Solanke, Manoj K. Sharma, Rahul Kumar, Shailendra Vyas, Paramjit Khurana, Jitendra P. Khurana, Akhilesh K. Tyagi, Arun K. Sharma.┬а(2009). Genome analysis and genetic enhancement of tomato.┬аCritical Reviews in Biotechnology, 29(2): 152-181.
Mathur, S. and Dasgupta, I.┬а(2007). Downstream promoter sequence of an Indian isolate of rice tungro bacilliform virus alters tissue-specific expression in host rice and acts differentially in heterologous system.┬аPlant Molecular Biology, 65(3), 259-275.
Niazi, F.R., Dasgupta, I., Singh, J.,┬аMathur, S. and Varma, A.┬а(2005). Characterization of new strains in rice tungro viruses.┬аIndian Phytopathology, 58(3), 308-313.
Nath, N.,┬аMathur, S. and Dasgupta, I.┬а(2002). Molecular analysis of two complete rice tungro bacilliform virus genomic sequences from India.┬аArchives of Virology, 147(6), 1173-1187.
Patent
Patent entitled тАЬRTBV plant promoter and process thereofтАЭ. Inventors:┬аMathur S┬аand Dasgupta I.┬аInternational Patent┬аApplication number PCT/IN2005/000285.
A patent for the USA, Eurasian countries, Japan and several other countries has been granted. The patent no. is 013229
The patent has been commercialized with ‘Bejo Sheetal Seeds’, Jalna, India.
Our research in news
Work from our lab on identifying and functionally characterizing heat stress genes for providing thermotolerance in tomato (Balyan et al., 2020 in Plant Biotechnology Journal) has been in focus and shared and presented at:
