Dr. Niranjan Chakraborty
FNA, FNASc, FNAASProfessor of Eminence
Ph. D: Jawaharlal Nehru University, New Delhi
Tel: 91-11-26735178
Fax: 91-11-26742658
Email: nchakraborty@nipgr.ac.in, nchakraborty@hotmail.com
Patents (National AND International)
US Patents
| Chakraborty S, Chakraborty N, Datta A, Asraf N, Basu S, Nag P, and Singh M (2015) Polynucleotides derived from chickpea and uses thereof (US Patent No. 9,163,255). |
| Datta A, Chakraborty S, Chakraborty N, Meli V and Ghosh S (2015) Polynucleotide sequence of fruit softening associated B-D-N-acetylhexosaminidase and its uses for enhancing fruit shelf life (US Patent No. 8,987,556) |
| Datta A, Chakraborty S, Chakraborty N, Meli V and Ghosh S (2015) Polynucleotide sequence of fruit softening associated α-mannosidase and its uses for enhancing fruit shelf life (US Patent No. 8,962,918). |
| Chakraborty N, Chakraborty S, Datta A, Wardhan V and Jahan K (2015) Polynucleotide encoding CaTLP1 protein and uses thereof. (US No.14/399,706). Published by USPTO on 07/05/2015 (US20150128305 A1). |
| Chakraborty N, Chakraborty S, Jaiswal, D.K., Mishra, P., Subba, P. and Rathi, D. (2018) Method of producing stress tolerant plants overexpressing CaSUN1 (US Patent No. 9,944,943 B2). |
| Chakraborty N, Chakraborty S, Verma JK, Gayali S, Dass S and Kumar A (2015) Method of producing stress tolerant plants overexpressing OsAlba1. (US No. 20,150,247,161). Published by USPTO on 03/09/2015 (US20150247161 A1). |
| Chakraborty N, Chakraborty S, Datta A and Bhushan D (2012) Extracellular matrix localized ferritin-1 for iron uptake, storage, and stress tolerance (US Patent No. 8,163,977). |
PCT Patents
| Chakraborty S, Chakraborty N, Datta A, Asraf N, Basu S, Nag P and Singh M (2017) Polynucleotides derived from chickpea and uses thereof for improving immunity to fungal pathogens (CP No. 2,772,654). |
| Chakraborty S, Chakraborty N, Datta A, Ashraf N, Basu S, Nag P and Singh M (2016) Polynucleotides derived from chickpea and uses thereof (EP No. 2470663). |
| Chakraborty S, Chakraborty N, Datta A, Asraf N, Basu S, Nag P and Singh M (2016) Polynucleotides derived from chickpea and uses thereof (APA No. 2010288112). |
| Datta, A., Chakraborty, S., Chakraborty N, Ghosh, S., and Meli, S.V. (2016) Polynucleotide sequence of fruit softening associated α-mannosidase and its uses for enhancing fruit shelf life (JP 6017784B2). |
| Datta, A., Chakraborty N, Chakraborty, S., Ghosh, S., Meli, V. (2016) Polynucleotide sequence of fruit softening associated B-D-N-acetylhexosaminidase and its uses for enhancing fruit shelf life (AU 2009269534). |
| Chakraborty N, Chakraborty, S., Wardhan, V., Rathi, D., Gupta. S. (2015). Method of generating stress tolerant plant over-expressing CaRRP1, reagents and uses thereof [PCT/IN2016/050437] [Pub. No. WO2017098530 A1]. |
| Datta, A., Chakraborty, S., Chakraborty N, Meli, S.V., and Ghosh, S. (2015) Polynucleotide sequence of fruit softening associated β-D-N-acetyhexosaminidase and its uses for enhancing fruit shelf life (JP 5836802B2). |
| Datta A, Chakraborty S, Chakraborty N, Ghosh S and Meli SV (2015) Polynucleotide sequence of fruit softening associated α-mannosidase and its uses for enhancing fruit shelf life (EP 2315835). |
| Datta, A., Chakraborty, S., Chakraborty N, Ghosh, S., Meli, V. (2014) Polynucleotide sequence of fruit softening associated B-D-N-acetylhexosaminidase and its uses for enhancing fruit shelf life (CA 2726292). |
| Datta A, Chakraborty S, Chakraborty N, Ghosh S and Meli SV (2014) Polynucleotide sequence of fruit softening associated α-mannosidase and its uses for enhancing fruit shelf life (AU 2009269533 B2). |
| Datta A, Chakraborty S, Chakraborty N, Ghosh S and Meli SV (2014) Polynucleotide sequence of fruit softening associated α-mannosidase and its uses for enhancing fruit shelf life (CA 2726282 A1). |
| Datta A, Chakraborty S, Chakraborty N and Meli V (2014) Polynucleotide sequence of fruit softening associated B-D-N-acetylhexosaminidase and its uses for enhancing fruit shelf life (EP-2315830) |
| Chakraborty N, Chakraborty S, Datta A, Wardhan V and Jahan K (2012) Polynucleotide encoding CaTLP1 and uses thereof. (PCT/IN2013/000302). Published by WIPO on 14/11/2013 (Pub. No. WO2013168181 A1). |
| Datta A, Chakraborty S, Chakraborty N, Ghosh S and Meli SV (2010) Polynucleotide sequence of fruit softening associated α-mannosidase and its uses for enhancing fruit shelf life (PCT/IN2009/000387). Published by WIPO on 14/01.2010 (Pub. No. WO 2010004582). |
| Chakraborty N, Chakraborty S, Datta A and Bhushan D (2008) Extracellular matrix localized ferritin-1 for iron uptake, storage, and stress tolerance (PCT/IN2007/000231). Published by WIPO on 29.05.2008 (Pub. No. WO 2007141808 A3). |
| Chakraborty S, Chakraborty N, Datta A, Asraf N, Basu S, Nag P and Singh M (2011) Polynucleotides derived from chickpea and uses thereof (WO2011024207A3). |
| Datta, A., Chakraborty, S., Chakraborty N, Ghosh, S., and Meli, S.V. (2010) Polynucleotide sequence of fruit softening associated α-mannosidase and its uses for enhancing fruit shelf life (WO 2010004582A1). |
| Datta, A., Chakraborty S, Chakraborty N, Meli, S.V., and Ghosh, S. (2010) Polynucleotide sequence of fruit softening associated β-D-N-acetyhexosaminidase and its uses for enhancing fruit shelf life (WO 2010004583A2). |
INDIAN Patents
| Chakraborty N, Chakraborty S, Wardhan V, Rathi D, Gupta S (2015) Method of generating stress tolerant plant over-expressing CaRRP1, reagents and uses thereof [IPA No.3983/DEL/2015]. |
| Chakraborty N, Chakraborty S, Verma JK, Dass S, Gayali S, Kumar A and Praveen S (2014) A method of producing stress tolerant plants over-expressing OsAlba1 [IPA No. 3759/DEL/2013]. |
| Datta A, Chakraborty N, Chakraborty S, Kamthan M and Kamthan A (2014) Polynucleotide Associated with Ergosterol Biosynthesis and uses thereof [IPA-925/DEL/2014]. |
| Chakraborty N, Chakraborty S, Jaiswal DK, Mishra P, Subba P and Rathi D (2014) A method of producing stress tolerant plants (IPA No. 8/DEL/2014). |
| Chakraborty N, Chakraborty S, Verma JK, Gayali S, Dass S and Kumar A (2013) A method of producing stress tolerance rice plants (IPA No. 3759/DEL/2013). |
| Chakraborty N, Chakraborty S, Datta A, Wardhan V and Jahan K (2012) Polynucleotide encoding CaTLP1 and uses thereof [IPA No.1406/DEL/2012]. |
| Datta A, Chakraborty S, Chakraborty N, Kamthan M and Kamthan A (2012) Polynucleotide sequence of an ergosterol biosynthesis enzyme ∆7-sterol-C-5-desaturase and uses thereof [IPA No. 3671/DEL/2012]. |
| Datta A, Chakraborty S, Chakraborty N, Ghosh S and Meli SV (2010) Polynucleotide sequence of fruit softening associated α-mannosidase and its uses for enhancing fruit shelf life [IPA No.1647/DEL/2008]. Published by Indian Patent Office on 16.04.2010. |
| Chakraborty S, Datta A, Chakraborty N, Ashraf N and Basu S (2009) Functional genomics and stress responsive polynucleotides from chickpea [IPA No.1565/DEL/2009]. |
| Datta A, Chakraborty S, Chakraborty N, Ghosh, S. and Meli, S.V. (2010) Polynucleotide sequence of fruit softening associated β-D-N-acetyhexosaminidase and its uses for enhancing fruit shelf life [IPA No.1648/DEL/2008]. Published by Indian Patent Office on 23.04.2010. |
| Chakraborty N, Chakraborty, S., Datta, A. and Bhushan, D. (2006) Extracellular matrix localized ferritin-1 for iron uptake, storage, and stress tolerance [IPA No.1371/DEL/2006]. |
Editorial experience
Academic Editor, Plant Direct.Editorial Board Member, Crop Design, Elsevier.
Early Career Reviewer, The Journal of Biological Chemistry.
Review editor, Frontiers in plant sciences and pharmaceutical innovations.
Reviewer Board Member, Microorganisms.
Serving as a reviewer in evaluating several research works | Web of Science.
Profile
Research
The research in my laboratory is aimed at elucidation of the molecular circuitry used by plants in response to environmental stress. This enables the identification of key components which would help in their targeted manipulation in transgenic plants. Our efforts to address these involve utilization of a repertoire of approaches, which include physiochemical, proteomic and genomic tools. Recent advances in proteomics have created an opportunity for dissecting quantitative and qualitative traits in a more meaningful way. The proteomics approach is ideally suited for fast and sensitive analysis of the functions of the plant genes and gene-products, the proteins. Our research interest can be grouped under two thrust areas: stress proteomics, and gene expression and regulation.
STRESS PROTEOMICS
The application of proteomics technologies to advance our knowledge of stress tolerance in crop species has increased dramatically in the past few years. We are focusing on subcellular proteomics and using a number of proteome mining tools to understand the role of protein modifications and/or their differential expression under stress conditions. We have developed differential proteomes in response to various environmental stresses. The major focus is to discover the regulatory genes that control stress tolerance in crop plants, which would not only aid in elucidation of the underlying mechanism(s) of stress tolerance, but also serve as a valuable resource for engineering strategies towards improved stress adaptation.
GENE EXPRESSION AND REGULATION
Stress tolerance is a quantitative trait determined by multiple and complex genetic interactions. Plant response to stress involves changes in the expression of thousands of genes, which in turn are affected by complex interactions with the environment, beyond the stress of interest. To better understand the interdependent action of an array of genes, my group has been working on several crop species, owing to the variable degree of tolerance among cultivars. This approach provides correlative evidence for genes involved in stress adaptation. While our research has shown the involvement of several novel genes in stress physiology, the richness of the candidate genes points to the enormity of the complexity to be deciphered for understanding the stress-responsive network.
Awards and Honors
| Fellow, Indian National Science Academy, India |
| Fellow, National Academy of Agricultural Sciences, India |
| Fellow, National Academy of Sciences, India |
| DBT Award of Biotechnology Overseas Associateship |
| ICCR Commonwealth Scholarship and Fellowship |
Publications
| Lande, N.V., Barua, P., Gayen, D., Wardhan, V., Jeevraj, T., Chakraborty, S. and Chakraborty, N. (2022) Dehydration-responsive chickpea chloroplast protein, CaPDZ1, confers dehydration tolerance by improving photosynthesis. Physiol. Plant. 174: e13613. |
| Kumar, S., Lande, N.V., Barua, P., Pareek, A., Chakraborty, S. and Chakraborty, N. (2022) Proteomic dissection of rice cytoskeleton reveals the dominance of microtubule and microfilament proteins, and novel components in the cytoskeleton-bound polysome. Plant Physiol. Biochem. 170: 75-86. |
| Rathi, D., Verma, J.K., Chakraborty, S. and Chakraborty, N. (2022) Dissection of grasspea (Lathyrus sativus L.) root exoproteome reveals critical insights and novel proteins. Plant Sci. 316: 111161. |
| Mishra, D., Shekhar, S., Chakraborty, S. and Chakraborty, N. (2021) High temperature stress responses and wheat: Impacts and alleviation strategies. Environ. Exp. Bot. 190: 104589. |
| Mishra, D., Shekhar, S., Chakraborty, S. and Chakraborty, N. (2021) Wheat 2-Cys peroxiredoxin plays a dual role in chlorophyll biosynthesis and adaptation to high temperature. Plant J. 105: 1374-1389. |
| Pareek, A., Mishra, D., Rathi, D., Verma, J.K., Chakraborty, S. and Chakraborty, N. (2021) The small heat shock proteins, chaperonin 10, in plants: An evolutionary view and emerging functional diversity. Environ. Exp. Bot. 182: 104323. |
| Rathi, D., Chakraborty, S. and Chakraborty, N.§ (2021) Grasspea, a critical recruit among neglected and underutilized legumes, for tapping genomic resources. Curr. Plant Biol. 26: 100200. |
| Kumar, R., Barua, P., Chakraborty, N. and Nandi A.K. (2020) Systemic acquired resistance specific proteome of Arabidopsis thaliana. Plant Cell Rep. 39: 1549-1563. |
| Rai, Y., Wardhan, V., Gupta, D.B. and Chakraborty, N. (2020) Calcium-dependent changes in physicochemical properties and the proteome dynamics influence dehydration responses in rice. Environ. Exp. Bot. DOI: 10.1016/j.envexpbot.2019.103965. |
| Narula, K., Elagamey, E., Abdellatef, M.A.E., Sinha, A., Ghosh, S., Chakraborty, N. and Chakraborty, S. (2020) Chitosan‐triggered immunity to Fusarium in chickpea is associated with changes in the plant extracellular matrix architecture, stomatal closure and remodelling of the plant metabolome and proteome. Plant J. 103: 561-583. |
| Sinha, A., Haider, T., Narula, K., Ghosh, S., Chakraborty, N. and Chakraborty, S. (2020) Integrated seed proteome and phosphoproteome analyses reveal interplay of nutrient dynamics, carbon‐nitrogen partitioning and oxidative signaling in chickpea. Proteomics 20: 1900267. |
| Barua, P., Lande, N.V., Kumar, S., Chakraborty, S. and Chakraborty, N. (2020) Quantitative phosphoproteomic analysis of legume using TiO2-based enrichment coupled with isobaric labeling. Methods Mol. Biol. 2107: 395-406.] |
| Lande, N.V., Barua, P., Gayen, D., Kumar, S., Varshney, S., Sengupta, S., Chakraborty, S. and Chakraborty, N. (2020) Dehydration-induced alterations in chloroplast proteome and reprogramming of cellular metabolism in developing chickpea delineate interrelated adaptive responses. Plant Physiol. Biochem. 146: 337-348. |
| Lande, N.V., Barua, P., Gayen, D., Kumar, S., Chakraborty, S. and Chakraborty, N. (2020) Proteomic dissection of the chloroplast: Moving beyond photosynthesis. J. Proteomics 212: 103542. |
| Elagamey, E., Narula, K., Chakraborty, N. and Chakraborty, S. (2020) Extracellular matrix proteome: Isolation of ECM proteins for proteomics studies. Methods Mol. Biol. 2057: 155-172. |
| Pareek, A., Rathi, D., Mishra, D., Chakraborty, S. and Chakraborty, N. (2019) Physiological plasticity to high temperature stress in chickpea: Adaptive responses and variable tolerance. Plant Sci. 289: 110258. |
| Rathi, D., Pareek, A., Zhang, T., Pang, Q., Chen, S., Chakraborty, S. and Chakraborty, N. (2019) Metabolite signatures of grasspea suspension-cultured cells illustrate the complexity of dehydration response. Planta 250: 857-871. |
| Narula K, Choudhary P, Ghosh S, Elagamey E, Chakraborty N and Chakraborty S (2019) Comparative nuclear proteomics analysis provides insight into the mechanism of signaling and immune response to blast disease caused by Magnoporthe oryzae in rice. Proteomics 19: e1800188. |
| Rathi, D., Gayali, S., Pareek, A., Chakraborty, S. and Chakraborty, N. (2019) Transcriptome profiling illustrates expression signatures of dehydration tolerance in developing grasspea seedlings. Planta 250: 839-855. |
| Gayen, D., Barua, P., Lande, N.V., Varshney, S., Sengupta, S., Chakraborty, S. and Chakraborty, N. (2019) Dehydration-responsive alterations in the chloroplast proteome and cell metabolomics profile of rice reveals key stress adaptation responses. Environ. Exp. Bot. 160: 12-24. |
| Gayen, D., Gayali, S., Barua, P., Lande, N.V., Varshney, S., Sengupta, S., Chakraborty, S. and Chakraborty, N. (2019) Dehydration-induced proteomic landscape of mitochondria in chickpea reveals large-scale coordination of key biological processes. J. Proteomics 192: 267-279. |
| Barua, P., Lande, N.V., Subba, P., Gayen, D., Pinto, S., Prasad, T.S.K., Chakraborty, S. and Chakraborty, N. (2019) Dehydration-responsive nuclear proteome landscape of chickpea (Cicer arietinum L.) reveals phosphorylation-mediated regulation of stress response. Plant Cell Environ. 42: 230-244. |
| Narula, K., Choudhary, P., Ghosh, S., Elagamey, E., Chakraborty, N. and Chakraborty, S. (2019) Comparative nuclear proteomics analysis provides insight into mechanism of signalling and immune response to blast disease caused by Magnaporthe oryzae in rice. Proteomics 19: 1800188 |
| Mishra, D., Shekhar, S., Chakraborty, S. and Chakraborty, N. (2018) Carboxylase clamp tetratricopeptide repeat (TPR) domain containing Hsp90 cochaperones in Triticaace: an insight into structural and functional diversification. Environ. Exp. Bot. 155: 31-44. |
| Aggarwal, P.R., Nag, P., Choudhary, P., Chakraborty, N. and Chakraborty, S. (2018) Genotype-independent Agrobacterium rhizogenes mediated root transformation of chickpea: a rapid and efficient method for reverse genetics studies. Plant Methods14:55. |
| Rathi, D., Pareek, A., Gayali, S., Chakraborty, S. and Chakraborty, N. (2018) Variety-specific nutrient acquisition and dehydration-induced proteomic landscape of grasspea (Lathyrus sativus L.). J. Proteomics 183:45-57. |
| Ashraf, N., Basu, S., Narula, K., Ghosh, S., Tayal, R., Gangisetty, N., Biswas, S., Aggarwal, P., Chakraborty, N. and Chakraborty, S. (2018) Integrative network analysis of wilt transcriptome in chickpea reveal genotype dependent regulatory hubs in immunity and susceptibility. Sci. Rep. 8: 6528. |
| Parveen, S., Pandey, A., Jameel, N., Chakraborty, S. and Chakraborty, N. (2018) Transcriptional regulation of chickpea ferritin CaFer1 influences its role in iron homeostasis and stress response. J. Plant Physiol. 222: 9-16. |
| Verma, J.K., Wardhan, V., Singh, D., Chakraborty, S. and Chakraborty, N. (2018) Genome-wide identification of the Alba gene family in plants and stress-responsive expression of the rice Alba genes. Genes 9: E183. |
| Mishra, P., Wardhan, V., Pandey, A., Chakraborty, S., Garg, G. and Chakraborty, N. (2017) Comparative analysis of sequence-structure function relationship of the SUN-domain protein CaSUN1. J. Phylogentics Evol. Biol.5: 189. |
| Elagamey, E., Narula, K., Sinha, A., Ghosh, G., Abdellatef, M.A.E., Chakraborty, N. and Chakraborty, S. (2017) Quantitative extracellular matrix proteomics suggests cell wall reprogramming in host-specific immunity during vascular wilt caused by Fusarium oxysporum in chickpea. Proteomics DOI: 10.1002/pmic.201600374. |
| Elagamey, E., Sinha, A., Narula, K., Abdellatef, M.A.E., Chakraborty, N. and Chakraborty, S. (2017) Molecular dissection of extracellular matrix proteome reveals discrete mechanism regulating verticillium dahliae triggered vascular wilt disease in potato. Proteomics 17: 201600373. |
| Nag, P., Aggarwal, P.R., Ghosh, S., Narula, K., Tayal, R., Maheshwari, N., Chakraborty, N. and Chakraborty, S. (2017) Interplay of neuronal and non-neuronal genes regulates intestinal DAF-16-mediated immune response during Fusarium infection of Caenorhabditis elegans. Cell Death Discov. 3: e17073. |
| Lande, N.V., Subba, P., Barua, P., Gayen, D., Prasad, T.S.K., Chakraborty, S. and Chakraborty, N. (2017) Dissecting the chloroplast proteome of chickpea (Cicer arietinum L.) provides new insights into classical and non-classical functions. J. Proteomics 165: 11-20. |
| Mishra, D., Shekhar, S., Agrawal, L., Chakraborty, S. and Chakraborty, N. (2017) Cultivar-specific high temperature stress responses in bread wheat (Triticum aestivum L.) associated with physicochemical traits and defense pathways. Food Chem. 221: 1077-1087. |
| Barua, P., Gayen, D., Lande, N.V., Chakraborty, S. and Chakraborty, N. (2017) Global proteomic profiling and identification of stress-responsive proteins using two-dimensional gel electrophoresis. Methods Mol. Biol.1631: 163-179. |
| Pandey, A., Chakraborty, S. and Chakraborty, N. (2017) Nuclear proteome: Isolation of intact nuclei, extraction of nuclear proteins and 2-DE analysis. Methods Mol. Biol. 1696: 41-55. |
| Kumar, V., Chattopadhyay, A., Ghosh, S., Irfan, M., Chakraborty, N., Chakraborty, S. and Datta, A. (2016) Improving nutritional quality and fungal tolerance in soya bean and grass pea by expressing an oxalate decarboxylase. Plant Biotechnol. J. 14: 1394-405. |
| Ghosh, S., Narula, K., Sinha, A., Ghosh, R., Jawa, P., Chakraborty, N. and Chakraborty, S. (2016) Proteometabolomic analysis of transgenic tomato overexpressing oxalate decarboxylase uncovers novel proteins potentially involved in defense mechanism against Sclerotinia. J. Proteomics 143: 242-253. |
| Ghosh, S., Narula, K., Sinha, A., Ghosh, R., Jawa, P., Chakraborty, N. and Chakraborty, S. (2016) Proteometabolomic study of compatible interaction in tomato fruit challenged with Sclerotinia rolfsii illustrates novel protein network during disease progression. Front. Plant Sci. 7: 1034. |
| Narula, K., Ghosh, S., Aggarwal, P.R., Sinha, A., Chakraborty, N. and Chakraborty, S. (2016) Comparative proteomics of oxalate downregulated tomatoes points toward cross talk of signal components and metabolic consequences during post-harvest storage. Front. Plant Sci. 7: 1147 |
| Shekhar, S., Agrawal, L., Mishra, D., Buragohain, A.K., Unnikrishnan, M., Chokkappan, M.C., Chakraborty, S. and Chakraborty, N. (2016) Ectopic expression of amaranth seed storage albumin modulates photoassimilate transport and nutrient acquisition in sweetpotato. Sci. Rep. 6: 25384. |
| Parveen, S., Gupta, D.B., Dass, S., Kumar, A., Pandey, A., Chakraborty, S. and Chakraborty, N. (2016) Chickpea ferritin CaFer1 participates in oxidative stress response, and promotes growth and development. Sci. Rep. 6: 31218. |
| Wardhan, V., Pandey, A., Chakraborty, S. and Chakraborty, N. (2016) Chickpea transcription factor CaTLP1 interacts with protein kinases, modulates ROS accumulation and promotes ABA-mediated stomatal closure. Sci. Rep. 6: 38121. |
| Biswas, S., Aggarwal, P.R., Tayal, R., Sarkar, M.P., Chakraborty, N. and Chakraborty, S. (2016) RNA-seq analysis identifies key genes involved in chickpea (Cicer arietinum L.) shoot development. J. Bot. Soc. Bengal 70: 49-54. |
| Gayali, S., Acharya, S., Lande, N.V., Pandey, A., Chakraborty, S. and Chakraborty, N. (2016) CicerTransDB 1.0: a resource for expression and functional study of chickpea transcription factors. BMC Plant Biol. 16: 169. |
| Barua, P., Subba, P., Vikram, L.N., Mangalaparthi, K.K., Prasad, T.S.K., Chakraborty, S. and Chakraborty, N. (2016) Gel-based and gel-free search for plasma membrane proteins in chickpea (Cicer arietinum L.) augments the comprehensive data sets of membrane protein repertoire. J. Proteomics 143:199-208. |
| Shekhar, S., Mishra, D., Gayali, S., Buragohain, A.K., Chakraborty, S. and Chakraborty, N. (2016) Comparison of proteomic and metabolomic profiles of two contrasting ecotypes of sweetpotato (Ipomoea batata L). J. Proteomics 143: 306-317. |
| Ghosh, S., Narula, K., Mittal, P.K., Sarkar, M.P., Chakraborty, N. and Chakraborty, S. (2016) Proteomic profile reveals the diversity and complexity of leaf proteins in spinach (Beta vulgaris var. all green). J. Proteins Proteomics 7: 121-131. |
| Elagamey, E., Narula, K., Sinha, A., Aggarwal, P.R., Ghosh, S., Chakraborty, N. and Chakraborty, S. (2016) Extracellular matrix proteome and phosphoproteome of potato reveals functionally distinct and diverse canonical and non-canonical proteoforms. Proteomes 4: 20. |
| Irfan, M., Ghosh, S., Meli, M.S., Kumar, A., Kumar, V., Chakraborty, N., Chakraborty, S. and Datta, A. (2016) Fruit ripening regulation of alpha-mannosidase expression by the MADS box transcription factor RIPENING INHIBITOR and ethylene. Front. Plant Sci. 7: 10. |
| Kumar, V., Irfan, M., Ghosh, S., Chakraborty, N., Chakraborty, S. and Datta, A. (2016) Fruit ripening mutants reveal cell metabolism and redox state during ripening. Protoplasma 253: 581-594. [IF 3.356] |
| Rathi, D., Gayen, D., Gayali, S., Chakraborty, S. and Chakraborty, N. (2016) Legume proteomics: progress, prospects and challenges. Proteomics 16: 310-327. |
| Gupta, D.B., Rai, Y., Gayali, S., Chakraborty, S. and Chakraborty, N. (2016) Plant organellar proteomics in response to dehydration: turning protein repertoire into insights. Front. Plant Sci. 7: 460. |
| Rathi, D., Chakraborty, S. and Chakraborty, N. (2015) Proteomics of an orphan legume, grasspea: current status and future strategy. Plant Tissue Cult. Biotechnol. 25: 117‐141. |
| Narula, K., Pandey, A., Gayali, S., Chakraborty, N. and Chakraborty, S. (2015) Birth of plant proteomics in India: a new horizon. J. Proteomics 127: 34-43 |
| Chakraborty, N. (2015) Rice proteomics and beyond. J. Rice Res. 3: e113. |
| Shekhar, S., Mishra, D., Buragohain, A.K., Chakraborty, S. and Chakraborty, N. (2014) Comparative analysis of phytochemicals and nutrient availability in two contrasting cultivars of sweet potato (Ipomoea batatas L.). Food Chem. 173: 957-965. |
| Gupta, S., Wardhan, V., Kumar, A., Rathi, D., Pandey, A., Chakraborty, S. and Chakraborty, N. (2015) Secretome analysis of chickpea reveals dynamic extracellular remodeling and identifies a Bet v1-like protein, CaRRP1 that participates in stress response. Sci. Rep. 5: 18427. |
| Jaiswal, D.K., Mishra, P., Subba, P., Rathi, D., Chakraborty, S. and Chakraborty, N. (2014) Membrane-associated proteomics of chickpea identifies Sad1/UNC-84 protein (CaSUN1), a novel component of dehydration signaling. Sci. Rep. 4: 4177. |
| Irfan, M., Ghosh, S., Kumar, V., Chakraborty, N., Chakraborty, S. and Datta, A. (2014) Insights into transcriptional regulation of β-D-N acetylhexosaminidase,an N-glycan-processing enzyme involved in ripening-associated fruit softening. J. Exp. Bot.65: 5835-5848. |
| Kumar, R., Kumar, A., Subba, P., Gayali, S., Barua, P., Chakraborty, S. and Chakraborty, N. (2014) Nuclear phosphoproteome of developing chickpea seedlings (Cicer arietinum L.) and protein-kinase interaction network. J. Proteomics 105: 58-73. |
| Verma, J.K., Gayali, S., Dass, S., Kumar, A., Parveen, S., Chakraborty, S. and Chakraborty, N. (2014) OsAlba1, a dehydration-responsive nuclear protein of rice (Oryza sativa L.), participates in stress adaptation. Phytochemistry 100: 16-25. |
| Chakraborty, N., Ghosh, R., Ghosh, S., Narula, K., Tayal, R., Datta, A. and Chakraborty, S. (2013) Reduction of oxalate levels in tomato fruit and consequent metabolic remodeling following overexpression of a fungal oxalate decarboxylase. Plant Physiol.162: 364-378. |
| Agrawal, L., Narula, K., Basu, S., Shekhar, S., Ghosh, S., Datta, A., Chakraborty, N. and Chakraborty, S. (2013) Comparative proteomics reveals a role for seed storage protein, AmA1 in cellular growth, development and nutrient accumulation. J. Proteome Res.5: 4904-4930. |
| Subba, P., Barua, P., Kumar, R., Datta, A., Soni, K., Chakraborty, S. and Chakraborty, N. (2013) Phosphoproteomic dynamics of chickpea (Cicer arietinum L.) reveals shared and distinct components of dehydration response. J. Proteome Res. 12: 5025-5047. |
| Jaiswal, D.K., Ray, D., Choudhary, M., Subba, P., Kumar, A., Verma, J., Kumar, R., Datta, A., Chakraborty, S. and Chakraborty, N. (2013) Comparative proteomics of dehydration response in the rice nucleus: new insights into the molecular basis of genotype specific adaptation. Proteomics13: 3478-3497. |
| Subba, P., Kumar, R., Gayali, S., Shekhar, S., Parveen, S., Pandey, A., Datta, A., Chakraborty, S. and Chakraborty, N. (2013) Characterisation of the nuclear proteome of a dehydration-sensitive cultivar of chickpea and comparative proteomic analysis with a tolerant cultivar. Proteomics 13: 1973-1992. |
| Ghosh, S., Singh, U.K., Meli, V.S., Kumar, V., Kumar, A., Irfan, M., Chakraborty, N., Chakraborty, S. and Datta, A. (2013) Induction of senescence and identification of differentially expressed genes in tomato in response to monoterpene. PLoS One 8: e76029. |
| Shekhar, S., Agrawal, L., Buragohain, A.K., Datta, A., Chakraborty, S. and Chakraborty, N. (2013) Genotype independent regeneration and agrobacterium-mediated genetic transformation of sweet potato (Ipomoea batatas L.). Plant Tissue Cult. Biotechnol. 23: 87-100. |
| Deswal, R., Gupta, R., Dogra, V., Singh, R., Abat, J.K., Sarkar, A., Mishra, Y., Rai, V., Sreenivasulu, Y., Amalraj, R.S., Raorane, M., Chaudhary, R.P., Kohli, A., Giri, A.P., Chakraborty, N., Zargar, S.M., Agrawal, V.P., Agrawal, G.K., Job, D., Renaut, J. and Rakwal, R. (2013) Plant proteomics in India and Nepal: current status and challenges ahead. Physiol. Mol. Biol. Plants 19: 461-477. |
| Narula, K., Datta, A., Chakraborty, N. and Chakraborty, S. (2013) Comparative analyses of nuclear proteome: extending its function. Front. Plant Sci. 4: 100. |
| Jaiswal, D.K., Ray, D., Subba, P., Mishra, P., Gayali, S., Datta, A., Chakraborty, S. and Chakraborty, N.§ (2012) Proteomic analysis reveals the diversity and complexity of membrane proteins in chickpea (Cicer arietinum L.). Proteome Sci. 10: 59. |
| Wardhan, V., Jahan, K., Gupta, S., Chennareddy, S., Datta, A., Chakraborty, S. and Chakraborty, N. (2012) Overexpression of CaTLP1, a putative transcription factor in chickpea (Cicer arietinum L.), promotes stress tolerance. Plant Mol. Biol. 79: 479-493. |
| Kamthan, A., Kamthan, M., Azam, M., Chakraborty, N., Chakraborty, S. and Datta, A. (2012) Expression of a fungal sterol desaturase improves tomato drought tolerance, pathogen resistance and nutritional quality. Sci. Rep.2: 951. |
| Kamthan, A., Kamthan, M., Chakraborty, N., Chakraborty, S. and Datta, A.(2012) A simple protocol for extraction, derivatization, and analysis of tomato leaf and fruit lipophilic metabolites using GC-MS. Protoc. Exch. DOI:10.1038 /protex. 2012.061. |
| Kamthan, M., Mukhopadhyay, G., Chakraborty, N., Chakraborty, S. and Datta, A. (2012) Quantitative proteomics and metabolomics approaches to demonstrate N-acetyl-d-glucosamine inducible amino acid deprivation response as morphological switch in Candida albicans. Fungal Genet. Biol. 49: 369-378. |
| Agrawal, G.K., Sarkar, A., Agrawal, R., Ndimba, B.K., Tanou, G., Dunn, M.J., Kieselbach, T., Cramer, R., Wienkoop, S., Chen, S., Rafudeen, M.S., Deswal, R., Barkla, B.J., Weckwerth, W., Heazlewood, J.L., Renaut, J., Job, D., Chakraborty, N. and Rakwal, R. (2012) Boosting the globalization of plant proteomics through INPPO: current developments and future prospects. Proteomics 12: 359-368. |
| Gupta, S., Wardhan, V., Verma, S., Gayali, S., Rajamani, U., Datta, A., Chakraborty, S. and Chakraborty, N. (2011) Characterization of the secretome of chickpea suspension culture reveals pathway abundance and the expected and unexpected secreted proteins. J. Proteome Res. 10: 5006-5015. |
| Bhushan, D., Jaiswal, D.K., Ray, D., Basu, D., Datta, A., Chakraborty, S. and Chakraborty, N. (2011) Dehydration-responsive reversible and irreversible changes in the extracellular matrix: comparative proteomics of chickpea genotypes with contrasting tolerance. J. Proteome Res. 10: 2027-2046. |
| Ghosh, S., Meli, V.S., Kumar, A., Thakur, A., Chakraborty, N., Chakraborty, S. and Datta, A. (2011) The N-glycan processing enzymes a-mannosidase and b-D-N-acetylhexosaminidase are involved in ripening-associated softening in the non-climacteric fruits of capsicum. J. Exp. Bot. 62: 571-582. |
| Chattopadhyay, A., Subba, P., Pandey, A., Bhushan, D., Kumar, R., Datta, A., Chakraborty, S. and Chakraborty, N. (2011) Analysis of the grasspea proteome and identification of stress-responsive proteins upon exposure to high salinity, low temperature and abscisic acid treatment. Phytochemistry 72: 1293-1307. |
| Chakraborty, S., Chakraborty, N., Agrawal, L., Ghosh, S., Narula, K., Shekhar, S., Naik, P.S., Pande, P.C., Chakraborti, S.K. and Datta, A. (2010) Next-generation protein-rich potato expressing the seed protein gene AmA1 is a result of proteome rebalancing in transgenic tuber. Proc. Natl. Acad. Sci. USA 107: 17533-17538. |
| Meli, V.S., Ghosh, S., Prabha, T.N., Chakraborty, N., Chakraborty, S. and Datta, A. (2010) Enhancement of fruit shelf life by suppressing N-glycan processing enzymes. Proc. Natl. Acad. Sci. USA 107: 2413-2418. |
| Agrawal, G.K., Bourguignon, J., Rolland, N., Ephritikhine, G., Ferro, M., Jaquinod, M., Alexiou, K.G., Chardot, T., Chakraborty, N., Jolivet, P., Doonan, J.H. and Rakwal, R. (2010) Plant organelle proteomics: collaborating for optimal cell function. Mass Spectrom. Rev. PMID 21038434. |
| Pandey, A., Rajamani, U., Verma, J., Subba, P., Chakraborty, N., Datta A, Chakraborty, S. and Chakraborty, N. (2010) Identification of extracellular matrix proteins of rice (Oryza sativa L.) involved in dehydration-responsive network: a proteomic approach. J. Proteome Res. 9: 3443-3464. |
| Choudhary, M.K., Basu, D., Datta, A., Chakraborty, N. and Chakraborty, S. (2009) Dehydration-responsive nuclear proteome of rice (Oryza sativa L.) illustrates protein network, novel regulators of cellular adaptation and evolutionary perspect. Mol. Cell. Proteomics 8: 1579-1598. |
| Ashraf, N., Ghai, D., Barman, P., Basu, S., Gangisetty, N., Mandal, M.K., Chakraborty, N., Datta A and Chakraborty, S. (2009) Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrates predicted and unexpected genes and novel regulators of plant immunity. BMC Genomics 10: 415. |
| Pandey, A., Chakraborty, S. and Datta, A. and Chakraborty, N. (2008) Proteomics approach to identify dehydration responsive nuclear proteins from chickpea (Cicer arietinum L.). Mol. Cell. Proteomics7: 88-107. |
| Agrawal, L., Chakraborty, S., Jaiswal, D.K., Gupta, S., Datta, A. and Chakraborty, N. (2008) Comparative proteomics of tuber induction, development and maturation reveal the complexity of tuberization process in potato (Solanum tuberosum L.) J. Proteome Res. 7: 3803-3817. |
| Bhushan, D., Pandey A, Choudhary MK, Datta A, Chakraborty, S. and Chakraborty, N. (2007) Comparative proteomics analysis of differentially expressed proteins in chickpea extracellular matrix during dehydration stress. Mol. Cell. Proteomics 6: 1868-1884. |
| Chakraborty, N., Ohta, M.O. and Zhu, J.K. (2007) Recognition of a PP2C interaction motif in several plant protein kinases. Methods Mol. Biol. 365: 287-298. |
| Pandey, A., Choudhary, M.K., Bhushan, D., Chattopadhyay, A., Chakraborty, S., Datta, A. and Chakraborty, N. (2006) The nuclear proteome of chickpea (Cicer arietinum L.) reveals predicted and unexpected proteins. J. Proteome Res. 5: 3301-3311. |
| Bhushan, D., Pandey, A., Chattopadhyay, A., Choudhary, M.K., Chakraborty, S., Datta, A. and Chakraborty, N. (2006) Extracellular matrix proteome of chickpea (Cicer arietinum) illustrates pathway abundance, novel protein functions and evolutionary perspect. J. Proteome Res. 5: 1711-1720. |
| Chakraborty, S., Chakraborty, N., Jain, D., Salunke, D.M. and Datta, A. (2002) Active site geometry of oxalate decarboxylase from Flammulina velutipes: Role of histidine coordinated manganese in substrate recognition. Protein Sci. 11: 2138-2147. |
| Chakraborty, S., Sarmah, B., Chakraborty, N. and Datta, A. (2002) Premature termination of RNA polymerase II mediated transcription of a seed protein gene in Schizosaccharomyces pombe. Nuclei Acids Res.30: 2940-2949. |
| Sarmah, B., Chakraborty, N., Chakraborty, S. and Datta, A. (2002) Plant pre-Mrna splicing in fission yeast, Schizosaccharomyces pombe. Biochem. Biophy. Res. Commn. 293: 1209-1216. |
| Chakarborty, S., Chakarborty, N. and Datta, A. (2000) Increased nutritive value of transgenic potato by expressing a nonallergenic seed albumin gene from Amaranthus hypochondriacus. Proc. Natl. Acad. Sci. USA97: 3724-3729. |
| Chakraborty, N. and Tripathy, B.C. (1992) Involvement of singlet oxygen in 5-aminolevulinic acid induced photodynamic damage of cucumber (Cucumis sativus L.) chloroplasts. Plant Physiol. 98: 7-11. |
| Chakraborty, N. and Tripathy, B.C. (1992) 5-aminolevulinic acid induced photodynamic reaction in thylakoid membranes of cucumber (Cucumis sativus L.) chloroplasts. J. Plant Biochem. Biotechnol. 1: 65-68. |
| Tripathy, B.C. and Chakraborty, N. (1991) 5-aminolevulinic acid induced photodynamic damage to the photosynthetic electron transport chain of cucumber (Cucumis sativus L.) cotyledons. Plant Physiol. 96: 761-767. |
| Chakraborty, N. and Tripathy, B.C. (1990) Expression of 5-aminolevulinic acid induced damage to the thylakoid membrane in dark by brief pre-illumination. J. Biosci. 15: 199-204. |
Book Chapters
| Mishra D, Shekhar S, Singh D, Chakraborty S and Chakraborty N (2018). Heat shock proteins and abiotic stress tolerance in plants. In Regulation of heat shock protein responses. Eds. A. Asea and P. Kaur, Springer, Cham, Switzerland, pp. 41-69. |
| Pandey A, Chakraborty S and Chakraborty N (2018). Nuclear proteome: isolation of intact nuclei, extraction of nuclear proteins, and 2-DE analysis. In Plant Membrane Proteomics. Eds. H. Mock, A. Matros and K. Witzel, Humana Press, New York, pp. 41-55. |
| Barua P, Gayen D, Lande NV, Chakraborty S and Chakraborty N (2017). Global proteomic profiling and identification of stress-responsive proteins using two-dimensional gel electrophoresis. In Plant Stress Tolerance. Eds. R. Sunkar, Humana Press, New York, NY, pp. 163-179. |
| Narula K, Sinha A, Haider T, Chakraborty N and Chakraborty S (2016) Seed Proteomics: An Overview. In Agricultural Proteomics. Ed. G. Salekdeh, Springer, Cham, Switzerland, pp. 31-52. |
| Chakraborty S, Pandey A, Datta A and Chakraborty N (2008) Nucleus. In Plant proteomics: technology, strategies, and applications.Eds.G.K. Agrawal and R. Rakwal, John Wiley & Sons, Inc., pp. 327-338. |
| Chakraborty N, Chakraborty S and Datta A (2005) Nutritional genomics: commitment to society. In Biodiversity: status and prospects. Eds. P. Tandon, M. Sharma and R. Swarup, Narosa Publishing House, New Delhi, pp. 35-42. |
| Chakraborty N, Chakraborty S and Datta A (2005) Designer GM potato with increased nutritive value. In Glimpses of the work on environment and development in India. Eds. J.S. Singh and V.P. Sharma. Angkor Publishers, New Delhi, pp. 269-272. |
| Chakraborty N, Chakraborty S, Kesarwani M, Mohammad A and Datta A (1998) Increased nutritive and qualitative value of transgenic plants expressing genes specifying amaranth seed albumin and Collybia oxalate decarboxylase. In Frontiers in biology: the challenges of biodiversity biotechnology. Ed. K.T. Shao. Academia Sinica, Taipei, pp. 125-131. |
| Mehta A, Natarajan K, Raina A, Biswas S, Chakraborty N and Datta A (1997) Molecular analysis of genes encoding Amaranthus seed specific protein and Collybia oxalate decarboxylase to develop transgenic plants. In Plant molecular biology and biotechnology. Eds. K.K. Tiwari and G.S. Singhal. Narosa Publishing House, New Delhi, pp. 321-326. |