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Current Faculty Publications

  1. Ajmera I, Shi J, Giri J, Wu P, Stekel DJ, Lu C and Hodgman TC (2018) Regulatory feedback response mechanisms to phosphate starvation in rice. NPJ Systems Biology and Applications 4: 4.

  2. Ashraf N, Basu S, Narula K, Ghosh S, Tayal R, Gangisetty N, Biswas S, Aggarwal PR, Chakraborty N, Chakraborty S (2018) Integrative network analyses of wilt transcriptome in chickpea reveal genotype dependent regulatory hubs in immunity and susceptibility. Scientific Reports 8: 6528.

  3. Barua P, Lande NV, Subba P, Gayen D, Pinto S, Prasad TSK, Chakraborty S and Chakraborty N (2018) Dehydration-responsive nuclear proteome landscape of chickpea (Cicer arietinum L.) reveals phosphorylation-mediated regulation of stress response. Plant, Cell & Environment (In Press).

  4. Basu U, Bajaj D, Sharma A, Malik N, Daware A, Narnoliya L, Thakro V, Upadhyaya HD, Kumar R, Tripathi S, Bharadwaj C, Tyagi AK and Parida SK (2018) Genetic dissection of photosynthetic efficiency traits for enhancing seed yield in chickpea. Plant, Cell & Environment (In Press).

  5. Berger A, Brouquisse R, Pathak PK, Hichri I, Singh I, Bhatia S, Boscari A, Igamberdiev AU and Gupta KJ (2018) Pathways of nitric oxide metabolism and operation of phytoglobins in legume nodules: missing links and future directions. Plant, Cell & Environment (In Press).

  6. Bhosale R, Giri J, Pandey BK, Giehl RFH, Hartmann A, Traini R, Truskina J, Leftley N, Hanlon M, Swarup K, Rashed A, Voβ U, Alonso J, Stepanova A, Yun J, Ljung K, Brown KM, Lynch JP, Dolan L, Vernoux T, Bishopp A, Wells D, Von Wirén N, Bennett MJ and Swarup R (2018) A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate. Nature Communications 9: 1409.

  7. Chaliha C, Nath BK, Verma PK and Kalita E (2018) Synthesis of functionalized Cu:ZnS nanosystems and its antibacterial potential. Arab. J. Chem. (In Press).

  8. Ghosh S, Kanwar P and Jha G (2018) Identification of candidate pathogenicity determinants of Rhizoctonia solani AG1-IA, which causes sheath blight disease in rice. Current Genetics (In Press).

  9. Giri J, Bhosale R, Huang G, Pandey BK, Parker H, Zappala S, Yang J, Dievart A, Bureau C, Ljung K, Price A, Rose T, Larrieu A, Mairhofer S, Sturrock CJ, White P, Dupuy L, Hawkesford M, Perin C, Liang W, Peret B, Hodgman CT, Lynch J, Wissuwa M, Zhang D, Pridmore T, Mooney SJ, Guiderdoni E, Swarup R and Bennett MJ (2018) Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nature Communications 9: 1408.

  10. Gupta A, Kamalachandran D, Longchar B and Senthil-Kumar M (2018) Impact of soil moisture regimes on wilt disease in tomato: current understanding. In: Wani SH (ed), Biochemical, Physiological and Molecular Avenues for Combating Abiotic Stress Tolerance in Plants. Academic Press, (In Press).

  11. Gupta KJ, Kumari A, Florez-Sarasa I, Fernie AR and Igamberdiev AU (2018) Interaction of nitric oxide with the components of plant mitochondrial electron transport chain. Journal of Experimental Botany (In Press).

  12. Jalmi SK, Bhagat PK, Verma D, Noryang S, Tayyeba S, Singh K, Sharma D and Sinha AK (2018) Traversing the links between heavy metal stress and plant signaling. Frontiers in Plant Science 9: 12

  13. Jamsheer KM, Sharma M, Singh D, Mannully CT, Jindal S, Shukla BN and Laxmi A (2018) FCS-like zinc finger 6 and 10 repress SnRK1 signalling in Arabidopsis. Plant Journal 94: 232-245.

  14. Jha UC, Jha R, Bohra A, Parida SK, Kole PC, Thakro V, Singh D and Singh NP (2018) Population structure and association analysis of heat stress relevant traits in chickpea (Cicer arietinum L.). 3 Biotech 8: 43.

  15. Kaashyap M, Ford R, Kudapa H, Jain M, Edwards D, Varshney R and Mantri N (2018) Differential regulation of genes involved in root morphogenesis and cell wall modification is associated with salinity tolerance in chickpea. Scientific Reports 8: 4855.

  16. Kryvoruchko IS, Routray P, Sinharoy S, Torres-Jerez I, Tejada-Jimenez M, Finney LA, Nakashima J, Pislariu CI, Benedito VA, Gonzalez-Guerrero M, Roberts DM and Udvardi MK (2018) An iron-activated citrate transporter, MtMATE67, is required for symbiotic nitrogen fixation. Plant Physiology 176: 2315-2329.

  17. Kumar K, Purayannur S, Kaladhar VC, Parida SK and Verma PK (2018) mQTL-seq and classical mapping implicates the role of an AT-HOOK MOTIF CONTAINING NUCLEAR LOCALIZED (AHL) family gene in ascochyta blight resistance of chickpea. Plant, Cell & Environment (In Press).

  18. Kumar R and Bisht NC (2018) Duplicated RGS (Regulator of G-protein signaling) proteins exhibit conserved biochemical but differential transcriptional regulation of heterotrimeric G-protein signaling in Brassica species.

  19. Kumar R, Swain DM, Yadav SK, Tyagi I, Kumar R, Das J, Ghosh S and Jha G (2018) Bacteria-fungal confrontation and fungal growth prevention assay. Bio-Protocol 8: e2694.

  20. Kumar R, Yadav SK, Swain DM and Jha G (2018) Burkholderia gladioli strain NGJ1 deploys a prophage tail-like protein for mycophagy. Microbial Cell 5: 116 - 118.

  21. Kumar V, Waseem M, Dwivedi N, Maji S, Kumar A and Thakur JK (2018) KIX domain of AtMed15a, a Mediator subunit of Arabidopsis, is required for its interaction with different proteins. Plant Signaling & Behavior 13: e1428514.

  22. Majee M, Kumar S, Kathare P, Wu S, Gingerich D, Nayak N, Salaita L, Dinkins R, Martin K, Goodin M, Dirk L, Lloyd T, Zhu L, Chappell J, Hunt A, Vierstra R, Huq E and Downie AB (2018) Kelch f-box protein positively influences Arabidopsis seed germination by targeting phytochrome-interacting factor1. Proceedings of the National Academy of Sciences, USA 115: E4120-E4129.

  23. Mandal A, Mishra AK, Dulani P, Muthamilarasan M, Shweta S and Prasad M (2018) Identification, characterization, expression profiling, and virus-induced gene silencing of armadillo repeat-containing proteins in tomato suggest their involvement in tomato leaf curl New Delhi virus resistance. Functional & Integrative Genomics (In Press).

  24. Mishra A, Jha G and Thakur IS (2018) Draft genome sequence of Zhihengliuella sp. strain ISTPL4, a psychrotolerant and halotolerant bacterium isolated from pangong lake, India.

  25. Pandey A, Chakraborty S and Chakraborty N (2018) Nuclear proteome: Isolation of intact nuclei, extraction of nuclear proteins, and 2-DE analysis.Methods in Molecular Biology 1696: 41-55.

  26. Parveen S, Pandey A, Jameel N, Chakraborty S and Chakraborty N (2018) Transcriptional regulation of chickpea ferritin CaFer1 influences its role in iron homeostasis and stress response. Journal of Plant Physiology 222: 9-16.

  27. Priya P, Yadav A, Chand J and Yadav G (2018) Terzyme: a tool for identification and analysis of the plant terpenome. Plant Methods 14: 4.

  28. Rao V, Petla B P, Verma P, Salvi P, Kamble NU, Ghosh S, Kaur H, Saxena SC and Majee M (2018) Arabidopsis SKP1-like protein 13 (ASK13) positively regulates seed germination and seedling growth under abiotic stresses. Journal of Experimental Botany (In Press).

  29. Rathi D, Pareek A, Gayali S, Chakraborty S and Chakraborty N (2018) Variety-specific nutrient acquisition and dehydration-induced proteomic landscape of grasspea (Lathyrus sativus L.). Journal of Proteomics (In Press).

  30. Salvi P, Kamble NU and Majee M (2018) Stress inducible galactinol synthase of chickpea (CaGolS) implicates in heat and oxidative stress tolerance through reducing stress induced excessive reactive oxygen species accumulation. Plant and Cell Physiology (In Press).

  31. Sarkar Das S, Yadav S, Singh A, Gautam V, Sarkar AK, Nandi AK, Karmakar P, Majee M and Sanan-Mishra N (2018) Expression dynamics of miRNAs and their targets in seed germination conditions reveals miRNA-ta-siRNA crosstalk as regulator of seed germination. Scientific Reports 8: 1233.

  32. Senthil-Kumar M, Wang M, Chang J, Ramegowda V, Pozo OD, Liu Y, Doraiswamy V, Lee HK, Ryu CM, Wang K, Xu P, Eck JV, Chakravarthy S, Dinesh-Kumar SP, Martin GB and Mysore KS(2018) Virus-induced gene silencing database for phenomics and functional genomics in Nicotiana benthamiana. Plant Direct 2: e00055.

  33. Singh A, Sagar S and Biswas DK (2018) Calcium dependent protein kinase, a versatile player in plant stress management and development. Critical Reviews in Plant Sciences (In Press).

  34. Singh A, Yadav AK, Kaur K, Sanyal SK, Jha SK, Fernandes JL, Sharma P, Tokas I, Pandey A, Luan S and Pandey GK (2018) Protein phosphatase 2C, AP2C1 interacts with and negatively regulates the function of CIPK9 under potassium deficient conditions in Arabidopsis. Journal of Experimental Botany (In Press).

  35. Singh N, Phukan T, Sharma PL, Kabyashree K, Barman A, Kumar R, Sonti RV, Genin S and Ray SK (2018) An innovative root inoculation method to study Ralstonia solanacearum pathogenicity in tomato seedlings. Phytopathology 108: 436-442.

  36. Singh V, Singh AP, Bhadoria J, Giri J, Singh J, T VV and Sharma PC (2018) Differential expression of salt-responsive genes to salinity stress in salt-tolerant and salt-sensitive rice (Oryza sativa L.) at seedling stage. Protoplasma (In Press).

  37. Sinha R and Senthil-Kumar M (2018) Possible strategies for the establishment of VIGS protocol in chickpea. In: Patil BL (ed), Genes, Genetics and Transgenics for Virus Resistance in Plants. Caister Academic Press, pp 327-341.

  38. Soda N, Verma L and Giri J (2018) CRISPR-Cas9 based plant genome editing: Significance, opportunities and recent advances. Plant Physiology and Biochemistry (In Press).

  39. Verma JK, Wardhan V, Singh D, Chakraborty S and Chakraborty N (2018) Genome-wide identification of the Alba gene family in plants and stress-responsive expression of the rice Alba genes. Genes 9: 183.

  40. Vishwakarma A, Kumari A, Mur LAJ and Gupta KJ (2018) A discrete role for alternative oxidase under hypoxia to increase nitric oxide and drive energy production. Free Radical Biology and Medicine (In Press).

  41. Wany A and Gupta KJ (2018) Reactive oxygen species, nitric oxide production and antioxidant gene expression during development of aerenchyma formation in wheat. Plant Signaling & Behavior 13: e1428515.

  42. Yadav CB, Pandey G, Muthamilarasan M and Prasad M (2018) Epigenetics and epigenomics of plants. In: Varshney RK, Pandey MK, Chitikineni A (eds), Advances in Biochemical Engineering/Biotechnology: Plant Genetics and Molecular Biology, Springer International Publishing, Switzerland, (In Press).

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