{"id":6926,"date":"2025-11-11T06:39:21","date_gmt":"2025-11-11T06:39:21","guid":{"rendered":"https:\/\/nipgr.ac.in\/nipgrv4\/?page_id=6926"},"modified":"2025-11-11T11:51:01","modified_gmt":"2025-11-11T11:51:01","slug":"disc-publication","status":"publish","type":"page","link":"https:\/\/nipgr.ac.in\/nipgrv4\/disc-publication\/","title":{"rendered":"DISC PUBLICATION"},"content":{"rendered":"\t\t
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Publications<\/h2>\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t
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Kumar A, Daware A, Kumar A, Kumar V, Krishnan S Gopala, Mondal S, Patra BC, Singh AK, Tyagi AK, Parida SK and\u00a0Thakur JK<\/strong>. Genome-wide analysis of polymorphisms identified grain trait-associated loci and domestication-associated polymorphism desert in rice.\u00a0Plant Journal<\/strong>\u00a0(2020) 103: 1525-1547.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Kumar A, Kumar S, Kumar A, Prasad M and\u00a0Thakur JK<\/strong>. Designing a mini-core collection effectively representing 3004 diverse rice accessions.\u00a0Plant Communications<\/strong>\u00a0(2020) 1: 100049<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Das D, Jaiswal M, Khan F N, Ahamad S and\u00a0Kumar S<\/strong>*. PlantPepDB: A manually curated plant peptide database.\u00a0Scientific reports<\/strong>\u00a0(2020), 10:2194.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Dwivedi N, Maji S, Waseem M, Kumar V, Parida SK and\u00a0Thakur JK<\/strong>. The Mediator subunit OsMed15a is a transcriptional co-regulator of seed size\/weight-modulating genes in rice.\u00a0Biochim Biophys Acta Gene Regul Mech<\/strong>\u00a0(2019) 1862: 194432
(Covered in news media like The Hindu, Deccan Herald, Nature India and Vigyan Prasar; Featured in “Rewind 2019: A look back at significant developments in Indian science this year:)<\/span><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Maji S, Dahiya P, Waseem M, Dwivedi N, Bhat DS, Dar T and\u00a0Thakur JK<\/strong>. Interaction map of Arabidopsis Mediator complex expounding its topology.\u00a0Nucleic Acids Res<\/strong>\u00a0(2019) 47: 3904-3920.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Singh, A., Zahra S., Das D. and\u00a0Kumar S<\/strong>.* AtFusionDB: A Database of Fusion Transcripts in Arabidopsis thaliana.\u00a0Database<\/strong>\u00a0(2019). Database (Oxford).Volume 2019 Jan 1.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Nagpal N, Sharma S, Maji S, Ferracin M,\u00a0Thakur JK<\/strong>* and Kulshreshtha R*. Essential role of MED1 in the transcriptional regulation of ER-dependent oncogenic miRNAs in breast cancer.\u00a0Sci Rep<\/strong>\u00a0(2018) 8(1):11805<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Kumar V, Waseem M, Dwivedi N, Maji S, Kumar A and\u00a0Thakur JK<\/strong>\u00a0(2018) KIX domain of AtMed15a, a Mediator subunit of Arabidopsis is required for its interaction with different proteins.\u00a0Plant Signal Behav<\/strong>\u00a013(2): e1428514<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Gupta, N., Zahra, S., Singh. A. and Kumar S.* PVsiRNAdb: A Database for Plant Exclusive Viral-derived small interfering RNAs. Database (2018). Database (Oxford).Volume 2018 Jan 1<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Gupta, N., Singh, A., Zahra, S. and\u00a0Kumar S<\/strong>*. PtRFdb: a database for plant transfer RNA-derived fragments. Database (2018).\u00a0Database<\/strong>\u00a0(Oxford). Volume 2018 Jan1.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Vivek AT, Zahra S and\u00a0Kumar S<\/strong>*. From current knowledge to best practice: A primer on Viral diagnostics using deep sequencing of virus-derived small interfering RNAs (vsiRNAs) in infected plants.\u00a0Methods<\/strong>. (In Press)<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Singh S, Qin F, Kumar S (Second Author), Elfman J, Lin E, Pham L, Yang A and Li H. (2020) The Landscape of Chimeric RNAs in Non-Diseased Tissues and Cells.\u00a0Nucleic acids research.<\/strong>\u00a048(4):1764-1778<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Wu P, Yang S, Singh S, Qin F, Kumar S, Wang L, Ma D and Li H: (2018) The Landscape and Implications of Chimeric RNAs in Cervical Cancer.\u00a0EBioMedicine\u00a0<\/strong>37:158-167<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Huang R, Kumar S, Li H: (2017) Absence of Correlation between Chimeric RNA and Aging.\u00a0Genes<\/strong>\u00a08: 386.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Yadav A, Thakur JK and Yadav G* (2017) KIXBASE: A Comprehensive web resource for identification and exploration of KIX domains.\u00a0Scientific Reports<\/strong>\u00a07(1):14924.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Yadav G<\/strong>\u00a0and Mohanty, D (2017) Databases developed in India for Biological Sciences.\u00a0Journal of Proteins and Proteomics<\/strong>\u00a08(3), 159-167<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Patra B, Kon Y,\u00a0Yadav G<\/strong>, Sevold A,.. Hintze A, Galas D and Ray A* (2017) A genome wide dosage suppressor network reveals genetic robustness\u00a0Nucleic Acids Research<\/strong>\u00a045(1),255-270<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Priya P, Kumari S and\u00a0Yadav G<\/strong>* (2016) Quantification of the plant terpenome: predicted versus actual emission potentials.\u00a0Ind J Plant Phys<\/strong>\u00a0DOI: 10.1007\/s40502-016-0256-x<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Yadav G<\/strong>* and Babu S (2016) Evidence for alternate stable states in collapsing ecological networks. doi: Biorxiv\/2016\/046045<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Amish K and\u00a0Yadav G<\/strong>* (2016) Diversification of the Histone Fold Motif (HFM) in Plants: Evolution of New Functional Roles.\u00a0Journal of Life Sciences<\/strong>\u00a0(In Press)<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Babu S and\u00a0Yadav G<\/strong>* (2016) Life Science Co-Authorship Networks Reveal Patterns of Scientific Collaboration and Research Impact.\u00a0Journal of Life Sciences<\/strong>\u00a0(In Press)<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Priya P, Bandhiwal N, Misra G, Mondal S and\u00a0Yadav G<\/strong>* (2015) IGMAP: An Interactive Mapping and Clustering Platform for Plants.\u00a0Molecular Plant.<\/strong>\u00a08(5): 818-821. doi:10.1016\/j.molp.2015.01.018<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Parween S, Nawaz K, Roy R, Pole AK, Venkata Suresh B, Misra G, Jain M,\u00a0Yadav G<\/strong>, Parida SK, Tyagi AK, Bhatia S, Chattopadhyay D (2015) An advanced draft genome assembly of a desi type chickpea (Cicer arietinum<\/em>\u00a0L.).\u00a0Scientific Reports<\/strong>\u00a0Doi: 10.1038\/srep12806.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Kumari S, Pundhir S, Priya P, Jeena G, Punetha A, Chawla K, Jafaree Z, Mondal S and\u00a0Yadav G<\/strong>\u00a0(2014) EssOilDB: A database of essential oils reflecting terpene composition and variability in the plant kingdom.\u00a0Database<\/strong>\u00a0(Accepted) DOI: 10.1093\/database\/bau120<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Misra G, Priya P, Bandhiwal N, Bareja N, Jain M, Bhatia S, Chattopadhyay D, Tyagi AK and\u00a0Yadav G*<\/strong>\u00a0(2014) The Chickpea Genomic Web Resource: Visualization and Analysis of the Desi-type Cicer arietinum Nuclear Genome for Comparative Exploration of Legumes.\u00a0BMC Plant Biology.<\/strong>\u00a014(1):<\/strong>\u00a0315<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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[Recommended by Faculty of 1000]\u00a0<\/em><\/strong>Schrick K, Bruno M, Khosla A, Roque RA, Nguyen H, Snyder MP, Singh D and\u00a0Yadav G<\/strong>\u00a0(2014) Shared functions of plant and mammalian StAR-related lipid transfer (START) domains in modulating transcription factor activity.\u00a0BMC Biology. 12:70<\/strong>\u00a0doi:10.1186\/s12915-014-0070-8\u00a0(F1000Prime Recommendation)<\/a><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Thakur JK, Yadav A and\u00a0Yadav G*<\/strong>\u00a0(2014) Molecular recognition by the KIX domain and its role in gene regulation.\u00a0Nucl. Acids Res. 42 (4):<\/strong>\u00a02112-2125<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Kumari S, Priya P, Misra G and\u00a0Yadav G*<\/strong>\u00a0(2013) Structural and biochemical perspectives in plant isoprenoid biosynthesis.\u00a0Phytochemistry Reviews. 12:<\/strong>\u00a0255-291.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Jain M, Misra G, Patel RK, Priya P, Jhanwar S, Khan AW, Shah N, Singh VK, Garg R, Jeena G, Yadav M, Kant C, Sharma P,\u00a0Yadav G<\/strong>, Bhatia S, Tyagi AK, Chattopadhyay D (2013) A draft genome sequence of the pulse crop chickpea (Cicer arietinum<\/em>\u00a0L.).\u00a0Plant Journal<\/strong>. DOI: 10.1111\/tpj.12173<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Kumari R,\u00a0Yadav G<\/strong>, Sharma V & Kumar S (2013) Cytosine hypomethylation at CHG and CHH sites in the pleiotropic mutants of Mendelian inheritance in\u00a0Catharanthus roseus<\/em>.\u00a0Journal of Genetics 92(3):<\/strong>\u00a0499-511<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Kumar S, Kumari R, Sharma V &\u00a0Yadav G<\/strong>\u00a0(2013) Common and Distinguishing Characteristics of Genes and Genomes and Their Evolution in the Genome Sequenced Legumes.\u00a0Proc Indian Natl Sci Acad. 79 (2):<\/strong>\u00a0277-286<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Yadav G<\/strong>, Anand S and Mohanty D (2013) Prediction of inter domain interactions in modular polyketide synthases by docking and correlated mutation analysis.\u00a0Journal of Biomolecular Structure and Dynamics 31(1):<\/strong>\u00a017-29.\u00a0(Spl Issue: Predictive biology using systems and integrative analysis and methods)<\/em><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Yadav G*<\/strong>\u00a0and Babu S (2012) NEXCADE: Perturbation Analysis for Complex Networks.\u00a0PLoS ONE 7(8):<\/strong>\u00a0e41827. doi:10.1371\/journal.pone.0041827<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Kumari S, Shridhar S, Singh D, Farmer R, Hundal J, Priya P, Sharma P, Bhavishi K, Schrick K, and\u00a0Yadav G*<\/strong>. (2012) The role of lectins and HD-ZIP transcription factors in Isoprenoid based plant stress responses\u00a0Proc. Ind. Natl. Sci. Acad. 78 (4):\u00a0<\/strong>671-691\u00a0(Article in Cover Illustration)<\/em><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Gaur R, Azam S, Jeena G, Khan AW, Chaudhary S, Jain M,\u00a0Yadav G<\/strong>, Tyagi AK, Chattopadhyay D, Bhatia S (2012) High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum<\/em>\u00a0L.).\u00a0DNA Research<\/strong>\u00a0pp:1-17 doi:10.1093\/dnares\/dss018<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Chaudhary S, Sharma V, Prasad M, Bhatia S, Tripathi BN,\u00a0Yadav G<\/strong>, Kumar S (2011) Characterization and genetic linkage mapping of the horticulturally important mutation leafless inflorescence (lli) in periwinkle\u00a0Catharanthus roseus<\/em>.\u00a0Sci. Horti<\/strong>. (in press) Doi: 10.1016\/j.scienta.2011.02.025<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Garg R, Patel RK, Jhanwar S, Priya P, Bhattacharjee A,\u00a0Yadav G<\/strong>, Bhatia S et al (2011) Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development.\u00a0Plant Physiol 156:<\/strong>\u00a01661-1678.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Anand S, Prasad MV,\u00a0Yadav G<\/strong>, Kumar N, Shehara J et al.(2010) SBSPKS: structure based sequence analysis of polyketide synthases.\u00a0Nucl. Acids. Res.<\/strong>\u00a02010 May 5. [Epub ahead of print]<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Kumar S, Mishra RK, Chaudhary S, Pandey R and\u00a0Yadav G<\/strong>\u00a0(2009) Co-regulation of Biomass Partitioning by Leafblade Morphology Genes Afila, Multifoliate-pinna, Tendril-less and Unifoliata in Grain Pea\u00a0Pisum sativum<\/em>.\u00a0Proc. Ind. Natl. Sc. Acad, 75\u00a0<\/strong>No. 1 pp 15-25.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Shridhar S, Chattopadhyay D, and Yadav G* (2009) PLecDom: A program for identification and analysis of plant Lectin Domains.\u00a0Nucl. Acids. Res. Jul 1;37<\/b>: W452-8. Epub 2009 May 27 (*corresponding author).<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Yadav G*, Prasad RLA, Jha BK, Rai V, Bhakuni VK and Datta K (2008). Evidence for inhibitory interaction of hyaluronan binding protein 1 (HABP1\/p32\/gC1qR) with S. pneumoniae hyaluronidase.\u00a0J. Biol. Chem 284(6)<\/b>: 3897-3905 (*corresponding author).<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Kaur H, Shukla RK, Yadav G, Chattopadhyay D and Majee M (2008) Two divergent genes encoding L-myo-inositol 1 -phosphate synthase1 (CaMIPS1) and 2 (CaMIPS2) are differentially expressed in chickpea.\u00a0Plant, Cell and Environment 31<\/b>: 1701-1716.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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Chopra T, Banerjee S, Gupta S, Yadav G, Anand S, et al. (2008) Novel Intermolecular Iterative Mechanism for Biosynthesis of Mycoketide Catalyzed by a Bimodular Polyketide Synthase.\u00a0PLoS Biology: 6(7):<\/b>\u00a0e163 doi:10.1371\/journal.pbio.0060163.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"

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