In Press:
  • Agrawal R, Jiri F and Thakur JK (2020) Kinase module of mediator complex: important signalling processor for development and survival of plants. Journal of Experimental Botany (In Press).
  • Balyan S, Rao S, Jha S, Bansal C, Das JR and Mathur S (2020) Characterization of novel regulators for heat stress tolerance in tomato from Indian sub-continent. Plant Biotechnology Journal (In Press).
  • Bandyopadhyay T and Prasad M (2020) IRONing out stress problems in crops: a homeostatic perspective. Physiologia Plantarum (In Press).
  • Deb S, Ghosh P, Patel HK and Sonti RV (2020) Interaction of the Xanthomonas effectors XopQ and XopX results in induction of rice immune responses. Plant Journal (In Press).
  • Gaur R, Verma S, Pradhan S, Ambreen H and Bhatia S (2020) A high-density SNP-based linkage map using genotyping-by-sequencing and its utilization for improved genome assembly of chickpea (Cicer arietinum L.). Functional & Integrative Genomics (In Press).
  • Gupta KJ, Hancock JT, Petrivalsky M, Kolbert Z, Lindermayr C, Durner J, Barroso JB, Palma JM, Brouquisse R, Wendehenne D, Corpas FJ, Loake GJ (2020) Recommendations on terminology and experimental best practice associated with plant nitric oxide research. New Phytologist (In Press).
  • Gupta KJ, Kolbert Z, Durner J, Lindermayr C, Corpas FJ, Brouquisse R, Barroso JB, Umbreen S, Palma JM, Hancock JT, Petrivalsky M, Wendehenne D and Loake GJ (2020) Regulating the regulator: nitric oxide control of post-translational modifications. New Phytologist (In Press).
  • Khandal H, Gupta SK, Dwivedi V, Mandal D, Sharma NK, Vishwakarma NK, Pal L, Choudhary M, Francis A, Malakar P, Singh NP, Sharma K, Sinharoy S, Singh NP, Sharma R and Chattopadhyay D (2020) Root-specific expression of chickpea cytokinin oxidase/dehydrogenase 6 leads to enhanced root growth, drought tolerance and yield without compromising nodulation. Plant Biotechnology Journal (In Press).
  • Kohli PS, Kumar Verma P, Verma R, Parida SK, Thakur JK and Giri J (2020) Genome-wide association study for phosphate deficiency responsive root hair elongation in chickpea. Functional & Integrative Genomics (In Press).
  • Kumar A, Daware A, Kumar A, Kumar V, Gopala Krishnan S, Mondal S, Patra BC, Singh AK, Tyagi AK, Parida SK and Thakur JK (2020) Genome-wide analysis of polymorphisms identified domestication-associated long low diversity region carrying important rice grain size/weight QTL. Plant Journal (In Press).
  • Kumar R, Barua P, Chakraborty N and Nandi AK (2020) Systemic acquired resistance specifc proteome of Arabidopsis thaliana. Plant Cell Reports (In Press).
  • Kumar R and Bisht NC (2020) Heterotrimeric Ga subunit regulates plant architecture, organ size and seed weight in the oilseed Brassica juncea. Plant Molecular Biology (In Press).
  • Malik N, Ranjan R, Parida SK, Agarwal P and Tyagi AK (2020) Mediator subunit OsMED14_1 plays an important role in rice development. Plant Journal (In Press).
  • Mathan J, Singh A and Ranjan A (2020) Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice. Physiologia Plantarum (In Press).
  • Muthamilarasan M and Prasad M (2020) Small millets for enduring food security amidst pandemics. Trends in Plant Science (In Press).
  • Narula K, Elagamey E, Abdellatef MAE, Sinha A, Ghosh S, Chakraborty N and Chakraborty S (2020) Chitosan-triggered immunity to Fusarium in chickpea is associated with changes in the plant extracellular matrix architecture, stomatal closure and remodelling of the plant metabolome and proteome. Plant Journal (In Press).
  • Ogunyewo OA, Randhawa A, Gupta M, Kaladhar VC, Verma PK and Yazdani SS (2020) Synergistic action of a lytic polysaccharide monooxygenase and a cellobiohydrolase from Penicillium funiculosum in cellulose saccharification under high substrate loading. Applied and Environmental Microbiology (In Press).
  • Paul K, Saha C, Nag M, Mandal D, Naiya H, Sen D, Mitra S, Kumar M, Bose D, Mukherjee G, Naskar N, Lahiri S, Das Ghosh U, Tripathi S, Poddar Sarkar M, Banerjee M, Kleinert A, Valentine A, Tripathy S, Sinharoy S and Seal A (2020) A tripartite interaction among the basidiomycete Rhodotorula mucilaginosa, N2-fixing endobacteria, and rice improves plant nitrogen nutrition. Plant Cell (In Press).
  • Prajapati R, Mittal D, Meena MK and Vadassery J (2020) Jasmonic acid (JA) induced-calcium elevation in Arabidopsis is highly variable due to time of day and conversion to JA-Ile. Journal of Plant Biochemistry and Biotechnology (In Press).
  • Prasad A, Sharma N, Hari-Gowthem G, Muthamilarasan M and Prasad M (2020) Tomato yellow leaf curl virus: impact, challenges, and management. Trends in Plant Science (In Press).
  • Praveen A, Pandey A and Gupta M (2020) Protective role of nitric oxide on nitrogen-thiol metabolism and amino acids profiling during arsenic exposure in Oryza sativa L. Ecotoxicology (In Press).
  • Ramu VS, Dawane A, Lee S, Oh S, Lee HK, Sun L, Senthil-Kumar M and Mysore KS (2020) Ribosomal protein QM/RPL10 positively regulates defence and protein translation mechanisms during nonhost disease resistance. Molecular Plant Pathology (In Press).
  • Saksena HB, Sharma M, Singh D and Laxmi A (2020) The versatile role of glucose signalling in regulating growth, development and stress responses in plants. Journal of Plant Biochemistry and Biotechnology (In Press).
  • Sharma N and Prasad M (2020) Silencing AC1 of Tomato leaf curl virus using artificial microRNA confers resistance to leaf curl disease in transgenic tomato. Plant Cell Reports (In Press).
  • Sharma NK, Gupta SK, Dwivedi V and Chattopadhyay D (2020) Lignin deposition in chickpea root xylem under drought. Plant Signaling & Behavior (In Press).
  • Singh P, Kumari A, Foyer CH and Gupta KJ (2020) The power of the phytoglobin-NO cycle in the regulation of nodulation and symbiotic nitrogen fixation. New Phytologist (In Press).
  • Sinha A, Haider T, Narula K, Ghosh S, Chakraborty N and Chakraborty S (2020) Integrated seed proteome and phosphoproteome analyses reveal interplay of nutrient dynamics, carbon-nitrogen partitioning and oxidative signaling in chickpea. Proteomics (In Press).
  • Singh AP, Pandey BK, Mehra P, Heitz T and Giri J (2020) OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice. Plant Molecular Biology (In Press).
  • Tiwari M and Bhatia S (2020) Expression profiling of miRNAs indicates crosstalk between phytohormonal response and rhizobial infection in chickpea. Journal of Plant Biochemistry and Biotechnology (In Press).
  • Vivek AT, Zahra S and Kumar S (2020) From current knowledge to best practice: A primer on Viral diagnostics using deep sequencing of virus-derived small interfering RNAs (vsiRNAs) in infected plants. Methods (In Press).
  • Yadav PK, Salvi P, Kamble NU, Petla BP, Majee M and Saxena SC (2020) Deciphering the structural basis of the broad substrate specificity of myo-inositol monophosphatase (IMP) from Cicer arietinum. International Journal Biological Macromolecules (In Press).
Research Articles:
  • Ahmed F, Senthil-Kumar M, Dai X, Ramu VS, Lee S, Mysore KS and Zhao PX (2020) pssRNAit-a web server for designing effective and specific plant siRNAs with genome-wide off-target assessment. Plant Physiology 184: 65-81.
  • Anjali A, Fatima U, Manu MS, Ramasamy S and Senthil-Kumar M (2020) Structure and regulation of SWEET transporters in plants: An update. Plant Physiology and Biochemistry 156: 1-6.
  • Arora R, Singh P, Kumari A, Pathak PK and Gupta KJ (2020) Using foldscope to monitor superoxide production and cell death during pathogen infection in arabidopsis under different nitrogen regimes. Methods in Molecular Biology 2057: 93-102.
  • Bandyopadhyay T and Prasad M (2020) A precise method for analyzing nitrogen use in foxtail millet. Methods in Molecular Biology 2057: 113-118.
  • Banerjee G, Singh D and Sinha AK (2020) Plant cell cycle regulators: Mitogen-activated protein kinase, a new regulating switch? Plant Science 301: 110660.
  • Baruah A, Sivalingam PN, Fatima U and Senthil-Kumar M (2020) Non-host resistance to plant viruses: What do we know? Physiological and Molecular Plant Pathology 111: 101506.
  • Barua P, Lande NV, Kumar S, Chakraborty S and Chakraborty N (2020) Quantitative phosphoproteomic analysis of legume using TiO2-based enrichment coupled with isobaric labeling. Methods in Molecular Biology 2107: 395-406.
  • Bhatt DN, Ansari S, Kumar A, Ghosh S, Narula A and Datta A (2020) Magnaporthe oryzae MoNdt80 is a transcriptional regulator of GlcNAc catabolic pathway involved in pathogenesis. Microbiological Research 239: 126550.
  • Bulle M, Kishorekumar R, Pathak PK, Wany A and Gupta KJ (2020) Measurement of nitrate reductase activity in tomato (Solanum lycopersicum L.) leaves under different conditions. Methods in Molecular Biology 2057: 27-35.
  • Bulle M, Kishorekumar R, Wany A and Gupta KJ (2020) Expression analysis of important genes involved in nitrogen metabolism under hypoxia. Methods in Molecular Biology 2057: 61-69.
  • Chaliha C, Kalita E and Verma PK (2020) Optimizing in vitro culture conditions for the biotrophic fungi Exobasidium vexans through response surface methodology. Indian Journal of Microbiology 60: 167-174.
  • Chatterjee A, Paul A, Unnati GM, Rajput R, Biswas T, Kar T, Basak S, Mishra N, Pandey A and Srivastava AP (2020) MAPK cascade gene family in Camellia sinensis: In-silico identification, expression profiles and regulatory network analysis. BMC Genomics 21: 613.
  • Das D, Jaiswal M, Khan FN, Ahamad S and Kumar S (2020) PlantPepDB: A manually curated plant peptide database. Scientific Reports 10: 2194.
  • Daware A, Parida SK and Tyagi AK (2020) Integrated genomic strategies for cereal genetic enhancement: combining QTL and association mapping. Methods in Molecular Biology 2072: 15-25.
  • Deepika, Ankit, Sagar S and Singh A (2020) Dark-induced hormonal regulation of plant growth and development. Frontiers in Plant Science 11: 581666.
  • Dharajiya DT, Shah A, Galvadiya BP, Patel MP, Srivastava R, Pagi NK, Solanki SD, Parida SK and Tiwari KK (2020) Genome-wide microsatellite markers in castor (Ricinus communis L.): Identification, development, characterization, and transferability in Euphorbiaceae. Industrial Crops and Products 151: 112461.
  • Elagamey E, Narula K, Chakraborty N and Chakraborty S (2020) Extracellular matrix proteome: Isolation of ECM proteins for proteomics studies. Methods in Molecular Biology 2057: 155-172.
  • Florez-Sarasa I, Fernie AR and Gupta KJ (2020) Does the alternative respiratory pathway offer protection against the adverse effects resulting from climate change? Journal of Experimental Botany 71: 465-469.
  • Ghosh S, Kamble NU and Majee M (2020) A protein repairing enzyme, PROTEIN L- ISOASPARTYL METHYLTRANSFERASE is involved in salinity stress tolerance by increasing efficiency of ROS-scavenging enzymes. Environmental and Experimental Botany 180: 104266.
  • Ghosh S, Kamble NU, Verma P, Salvi P, Petla BP, Roy S, Roy V, Hazra A, Varshney V, Kaur H and Majee M (2020) Arabidopsis Protein L-Isoaspartyl Methyltransferase repairs isoaspartyl damage to antioxidant enzymes and increases heat and oxidative stress tolerance. Journal of Biological Chemistry 295: 783-799.
  • Gupta A, Patil M, Qamar A and Senhil-Kumar M (2020) ath-miR164c influences plant responses to the combined stress of drought and bacterial infection by regulating proline metabolism. Environmental and Experimental Botany 172: 103998.
  • Gupta KJ, Mur LAJ, Wany A, Kumari A, Fernie AR and Ratcliffe RG (2020) The role of nitrite and nitric oxide under low oxygen conditions in plants. New Phytologist 225: 1143-1151.
  • Jaciuk M, Swuec P, Gaur V, Kasprzak JM, Renault L, Dobrychlop M, Nirwal S, Bujnicki JM, Costa A and Nowotny M (2020) A combined structural and biochemical approach reveals translocation and stalling of UvrB on the DNA lesion as a mechanism of damage verification in bacterial nucleotide excision repair. DNA Repair 85: 102746.
  • Jency JP, Rajasekaran R, Singh RK, Muthurajan R, Prabhakaran J, Mehanathan M, Prasad M and Ganesan J (2020) Induced mutagenesis enhances lodging resistance and photosynthetic efficiency of kodomillet (Paspalum scrobiculatum). Agronomy 10: 227.
  • Jogawat A, Meena MK, Kundu A, Varma M and Vadassery J (2020) Calcium channel CNGC19 mediates basal defense signaling to balance colonization of Piriformospora indica on Arabidopsis roots. Journal of Experimental Botany 71: 2752-2768.
  • Kaur N, Alok A, Shivani, Kumar P, Kaur N, Awasthi P, Chaturvedi S, Pandey P, Pandey A, Pandey AK and Tiwari S (2020) CRISPR/Cas9 directed editing of lycopene epsilon-cyclase modulates metabolic flux for β-carotene biosynthesis in banana fruit. Metabolic Engineering 59: 76-86.
  • Khandal H, Singh AP and Chattopadhyay D (2020) MicroRNA397b-LACCASE2 module regulates root lignification under water- and phosphate deficiency. Plant Physiology 182: 1387-1403.
  • Kishorekumar R, Bulle M, Wany A and Gupta KJ (2020) An overview of important enzymes involved in nitrogen assimilation of plants. Methods in Molecular Biology 2057: 1-13.
  • Kumar A, Kumar S, Singh KBM, Prasad M and Thakur JK (2020) Designing a mini-core collection effectively representing 3004 diverse rice accessions. Plant Communications 1: 100049.
  • Kumar S, Kumari R and Pandey R (2020) Lychee-associated hypoglycaemic encephalopathy: A new disease of children described in India. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences 90: 1-7.
  • Lakhwani D, Sanchita, Pandey A, Sharma D, Asif MH and Trivedi PK (2020) Novel microRNAs regulating ripening-associated processes in banana fruit. Plant Growth Regulation 90: 223-235.
  • Lande NV, Barua P, Gayen D, Kumar S, Chakraborty S and Chakraborty N (2020) Proteomic dissection of the chloroplast: Moving beyond photosynthesis. Journal of Proteomics 212: 103542.
  • Lande NV, Barua P, Gayen D, Kumar S, Varshney S, Sengupta S, Chakraborty S and Chakraborty N (2020) Dehydration-induced alterations in chloroplast proteome and reprogramming of cellular metabolism in developing chickpea delineate interrelated adaptive responses. Plant Physiology and Biochemistry 146: 337-348.
  • Longchar B, Phukan T, Yadav S and Senthil-Kumar M (2020) An efficient low-cost xylem sap isolation method for bacterial wilt assays in tomato. Applications in Plant Sciences 8: e11335.
  • Malukani KK, Ranjan A, Hota SJ, Patel HK and Sonti RV (2020) Dual activities of receptor-like kinase OsWAKL21.2 induce immune responses. Plant Physiology 183: 1345-1363.
  • Mandal D, Srivastava D and Sinharoy S (2020) Optimization of hairy root transformation for the functional genomics in chickpea: A platform for nodule developmental studies. Methods in Molecular Biology 2107: 335-348.
  • Mathew IE, Priyadarshini R, Mahto A, Jaiswal P, Parida SK and Agarwal P (2020) SUPER STARCHY1/ONAC025 participates in rice grain filling. Plant Direct 4: e00249.
  • Maurya R, Singh Y, Sinha M, Singh K, Mishra P, Singh SK, Verma S, Prabha K, Kumar K and Verma PK (2020) Transcript profiling reveals potential regulators for oxidative stress response of a necrotrophic chickpea pathogen Ascochyta rabiei. 3 Biotech 10: 117.
  • Mittal D, Mishra S, Prajapati R and Vadassery J (2020) Forward genetic screen using transgenic calcium reporter aequorin to identify novel targets in calcium signaling. Jove-Journal of Visualized Experiments 162: e61259.
  • Muthamilarasan M, Singh RK, Suresh BV, Rana S, Dulani P and Prasad M (2020) Genomic dissection and expression analysis of stress-responsive genes in C4 panicoid models, Setaria italica and Setaria viridis. Journal of Biotechnology 318: 57-67.
  • Nambiar DM, Kumari J, Arya GC, Singh AK and Bisht NC (2020) A cell suspension based uptake method to study high affinity glucosinolate transporters. Plant Methods 16: 75.
  • Pandey A, Devi LL and Singh AP (2020) Review: Emerging roles of brassinosteroid in nutrient foraging. Plant Science 296: 110474.
  • Pandey S, Prasad A, Sharma N and Prasad M (2020) Linking the plant stress responses with RNA helicases. Plant Science 299: 110607.
  • Pandey S, Sharma N and Prasad M (2020) Role of RNA-interacting proteins in modulating plant-microbe interactions. Advances in Genetics 105: 67-94.
  • Pillai SE, Kumar C, Dasgupta M, Kumar BK, Vungarala S, Patel HK and Sonti RV (2020) Ectopic expression of a cell-wall-degrading enzyme-induced OsAP2/ERF152 leads to resistance against bacterial and fungal infection in Arabidopsis. Phytopathology 110: 726-733.
  • Pucker B, Pandey A, Weisshaar B and Stracke R (2020) The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns. PLoS One 15: e0239275.
  • Rai Y, Wardhan V, Bhushan Gupta D and Chakraborty N (2020) Calcium-dependent changes in physicochemical properties and the proteome dynamics influence dehydration responses in rice. Environmental and Experimental Botany 172 : 103965.
  • Rani P, Gautam G, Anwar T, Gourinath S and Datta A (2020) Crystal structure of Gig2 protein from Candida albicans provides a structural insight into DUF1479 family oxygenases. International Journal Biological Macromolecules 150: 1272-1280.
  • Rao S, Balyan S, Jha S and Mathur S (2020) Novel insights into expansion and functional diversification of MIR169 family in tomato. Planta 251: 55.
  • Sagar S, Biswas DK and Singh A (2020) Genomic and expression analysis indicate the involvement of phospholipase C family in abiotic stress signaling in chickpea (Cicer arietinum). Gene 753: 144797.
  • Salvi P, Kamble NU and Majee M (2020) Ectopic over-expression of ABA-responsive Chickpea galactinol synthase (CaGolS) gene results in improved tolerance to dehydration stress by modulating ROS scavenging. Environmental and Experimental Botany 171: 103957.
  • Saxena SC, Salvi P, Kamble NU, Joshi PK, Majee M and Arora S (2020) Ectopic overexpression of cytosolic ascorbate peroxidase gene (Apx1) improves salinity stress tolerance in Brassica juncea by strengthening antioxidative defense mechanism. Acta Physiologiae Plantarum 42: 45.
  • Singh J, Gupta SK, Devanna BN, Singh S, Upadhyay A and Sharma TR (2020) Blast resistance gene Pi54 over-expressed in rice to understand its cellular and sub-cellular localization and response to different pathogens. Scientific Reports 10: 5243.
  • Singh RK, Deshmukh R, Muthamilarasan M, Rani R and Prasad M (2020) Versatile roles of aquaporin in physiological processes and stress tolerance in plants. Plant Physiology and Biochemistry 149: 178-189.
  • Singh RK, Prasad A, Muthamilarasan M, Parida SK and Prasad M (2020) Breeding and biotechnological interventions for trait improvement: status and prospects. Planta 252: 54.
  • Singh S, Qin F, Kumar S, Elfman J, Lin E, Pham LP, Yang A and Li H (2020) The landscape of chimeric RNAs in non-diseased tissues and cells. Nucleic Acids Research 48: 1764-1778.
  • Singh S, Singh A, Singh A, Yadav S, Bajaj I, Kumar S, Jain A and Sarkar AK (2020) Role of chromatin modification and remodeling in stem cell regulation and meristem maintenance in Arabidopsis. Journal of Experimental Botany 71: 778-792.
  • Singh N, Singh P, Pathak PK and Gupta KJ (2020) Using different forms of nitrogen to study hypersensitive response elicited by avirulent Pseudomonas syringae. Methods in Molecular Biology 2057: 79-92.
  • Singh P, Sahoo RK, Bulle M and Gupta KJ (2020) An efficient method of mitochondrial DNA isolation from Vigna radiata for genomic studies. Methods in Molecular Biology 2107: 305-315.
  • Singh S, Yadav S, Singh A, Mahima, Singh A, Gautam V and Sarkar AK (2020) Auxin signaling modulates LATERAL ROOT PRIMORDIUM1 (LRP1) expression during lateral root development in Arabidopsis. Plant Journal 101: 87-100.
  • Shivaraj SM, Vats S, Bhat JA, Dhakte P, Goyal V, Khatri P, Kumawat S, Singh A, Prasad M, Sonah H, Sharma TR and Deshmukh R (2020) Nitric oxide and hydrogen sulfide crosstalk during heavy metal stress in plants. Physiologia Plantarum 168: 437-455.
  • Smita S, Katiyar A, Lenka SK, Dalal M, Kumar A, Mahtha SK, Yadav G, Chinnusamy V, Pandey DM and Bansal KC (2020) Gene network modules associated with abiotic stress response in tolerant rice genotypes identified by transcriptome meta-analysis. Functional & Integrative Genomics 20: 29-49
  • Sood P, Singh RK and Prasad M (2020) An efficient Agrobacterium-mediated genetic transformation method for foxtail millet (Setaria italica L.). Plant Cell Reports 39: 511-525.
  • Tiwari S, Shweta, Prasad M and Lata C (2020) Genome-wide investigation of GRAM-domain containing genes in rice reveals their role in plant-rhizobacteria interactions and abiotic stress responses. International Journal Biological Macromolecules 156: 1243-1257.
  • Verma D, Jalmi SK, Bhagat PK, Verma N and Sinha AK (2020) A bHLH transcription factor, MYC2, imparts salt intolerance by regulating proline biosynthesis in Arabidopsis. FEBS Journal 287: 2560-2576.
  • Verma P, Tandon R, Yadav G and Gaur V (2020) Structural aspects of DNA repair and recombination in crop improvement. Frontiers in Genetics 11: 574549.
  • Wany A, Pathak PK and Gupta KJ (2020) Methods for measuring nitrate reductase, nitrite levels, and nitric oxide from plant tissues. Methods in Molecular Biology 2057: 15-26.
  • Yadav SK, Das J, Kumar R and Jha G (2020) Calcium regulates the mycophagous ability of Burkholderia gladioli strain NGJ1 in a type III secretion system-dependent manner. BMC Microbiology 20: 216.
Popular articles/ latest news:
  • Chakraborty S, Gowrishankar J, Joshi A, Kannan P, Kohli RK, Lakhotia SC, Misra G, Nautiyal CM, Ramasubramanian K, Sathyamurthy N and Singhvi AK (2020) Suggestions for a national framework for publication of and access to literature in science and technology in India. Current Science 118: 1026-1034.
  • Dhaka A and Prasad M (2020) Imported superfood quinoa versus Indian nutricereal millets. Current Science 118: 1646-1649.
  • Prasad A, Muthamilarasan M and Prasad M (2020) Synergistic antiviral effects against SARS-CoV-2 by plant-based molecules. Plant Cell Reports 39: 1109-1114.
  • Prasad A and Prasad M (2020) SARS-CoV-2: the emergence of a viral pathogen causing havoc on human existence. Journal of Genetics 99: 37.
  • Prasad A and Prasad M (2020) Single virus targeting multiple organs: what we know and where we are heading?. Frontiers in Medicine-Lausanne 7: 370.
  • Sharma N, Muthamilarasan M, Prasad A and Prasad M (2020) Genomics approaches to synthesis plant-based biomolecules for therapeutic applications to combat SARS-CoV-2. Genomics 112: 4322-4331.
  • Suby SB, Soujanya PL, Yadava P, Patil J, Subaharan K, Prasad GS, Babu KS, Jat SL, Yathish KR, Vadassery J, Kalia VK, Bakthavatsalam N, Shekhar JC and Rakshit S (2020) Invasion of fall armyworm (Spodoptera frugiperda) in India: nature, distribution, management and potential impact. Current Science 119: 44-51.
Book Chapter:
  • Jaiswal M, Zahra S and Kumar S (2020) Bioinformatics tools for epitope prediction. In: Singh S (ed), Systems and Synthetic Immunology. Springer, Singapore, pp 103-124.
  • Kumar A and Yadav G (2020) Networks of function and shared ancestry provide insights into diversification of histone fold domain in the plant kingdom. In: Cherifi H, Gaito S, Mendes JF, Moro E, Rocha LM (eds), Complex Networks and Their Applications VIII, COMPLEX NETWORKS 2019. Studies in Computational Intelligence, vol 882. Springer, Cham, pp 789-801.
  • Sagar S and Singh A (2020) Phospholipase C in abiotic stress-triggered lipid signaling in plants. In: Khan I, Singh A, Poór P (eds), Improving abiotic stress tolerance in plants, Chapter 14. CRC Press, Baca Raton, USA, pp 257-270.
  • Sagar S and Singh A (2020) The role of extracellular ATP in plant abiotic stress signaling. In: Khan I, Singh A, Poór P (eds), Improving abiotic stress tolerance in plants, Chapter 13. CRC Press, Baca Raton, USA, pp 247-256.
  • Yadav S, Sarkar Das S, Kumar P, Mishra V and Sarkar AK (2020) Tweaking microRNA-mediated gene regulation for crop improvement. In: Tuteja N, Tuteja R, Passricha N, Saifi SK (eds), Advancement in Crop Improvement Techniques, Chapter-3. Elsevier Inc. WoodHead Publishing, UK, pp 45-66.

Research Articles:
  • Augustine R and Bisht NC (2019) Targeted silencing of genes in polyploids: lessons learned from Brassica juncea-glucosinolate system. Plant Cell Reports 38: 51-57.
  • Bajpai PK, Reichelt M, Augustine R, Gershenzon J and Bisht NC (2019) Heterotic patterns of primary and secondary metabolites in the oilseed crop Brassica juncea. Heredity 123: 318-336.
  • Barua P, Lande NV, Subba P, Gayen D, Pinto S, Prasad TSK, Chakraborty S and Chakraborty N (2019) Dehydration-responsive nuclear proteome landscape of chickpea (Cicer arietinum L.) reveals phosphorylation-mediated regulation of stress response. Plant, Cell & Environment 42: 230-244.
  • Basu U, Bajaj D, Sharma A, Malik N, Daware A, Narnoliya L, Thakro V, Upadhyaya HD, Kumar R, Tripathi S, Bharadwaj C, Tyagi AK and Parida SK (2019) Genetic dissection of photosynthetic efficiency traits for enhancing seed yield in chickpea. Plant, Cell & Environment 42: 158-173.
  • Basu U, Narnoliya L, Srivastava R, Sharma A, Bajaj D, Daware A, Thakro V, Malik N, Upadhyaya HD, Tripathi S, Hegde VS, Tyagi AK and Parida SK (2019) CLAVATA signaling pathway genes modulating flowering time and flower number in chickpea. Theoretical and Applied Genetics 132: 2017-2038.
  • Basu U, Upadhyaya HD, Srivastava R, Daware A, Malik N, Sharma A, Bajaj D, Narnoliya L, Thakro V, Kujur A, Tripathi S, Bharadwaj C, Hegde VS, Pandey AK, Singh AK, Tyagi AK and Parida SK (2019) ABC transporter-mediated transport of glutathione conjugates enhances seed yield and quality in chickpea. Plant Physiology 180: 253-275.
  • Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, El Baidouri M, Guo B, Huang W, Kim KD, Korani W, Lanciano S, Lui CG, Mirouze M, Moretzsohn MC, Pham M, Shin JH, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks NT, Zhang X, Zheng Z, Sun Z, Froenicke L, Aiden EL, Michelmore R, Varshney RK, Holbrook CC, Cannon EKS, Scheffler BE, Grimwood J, Ozias-Akins P, Cannon SB, Jackson SA and Schmutz J. (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics 51: 877-884.
  • Chandan RK, Singh AK, Patel S, Swain DM, Tuteja N and Jha G (2019) Silencing of tomato CTR1 provides enhanced tolerance against Tomato leaf curl virus infection. Plant Signaling & Behavior 14: e1565595.
  • Chauhan S, Samanta S, Sharma N, Thakur JK, Dev K, Sourirajan A (2019) Saccharomyces cerevisiae polo-like kinase, Cdc5 exhibits ATP-dependent Mg2+ -enhanced kinase activity in vitro. Heliyon 5: e03050.
  • Das A, Sharma N and Prasad M (2019) CRISPR/Cas9: A novel weapon in the arsenal to combat plant diseases. Frontiers in Plant Science 9: 2008.
  • Das S, Parida SK, Agarwal P and Tyagi AK (2019) Transcription factor OsNF-YB9 regulates reproductive growth and development in rice. Planta 250: 1849-1865.
  • Deb S, Gupta MK, Patel HK and Sonti RV (2019) Xanthomonas oryzae pv. oryzae XopQ protein suppresses rice immune responses through interaction with two 14-3-3 proteins but its phospho-null mutant induces rice immune responses and interacts with another 14-3-3 protein. Molecular Plant Pathology 20: 976-989.
  • Dhar YV, Lakhwani D, Pandey A, Singh S, Trivedi PK and Asif MH (2019) Genome-wide identification and interactome analysis of members of two-component system in Banana. BMC Genomics 20: 674.
  • Dixit SK, Gupta A, Fatima U and Senthil-Kumar M (2019) AtGBF3 confers tolerance to Arabidopsis thaliana against combined drought and Pseudomonas syringae stress. Environmental and Experimental Botany 168: 103881.
  • Dwivedi N, Maji S, Waseem M, Thakur P, Kumar V, Parida SK and Thakur JK (2019) The Mediator subunit OsMED15a is a transcriptional co-regulator of seed size/weight-modulating genes in rice. Biochimica et Biophysica Acta (BBA)- Gene Regulatory Mechanisms 1862: 194432.
  • Farhat S, Jain N, Singh N, Sreevathsa R, Dash PK, Rai R, Yadav S, Kumar P, Sarkar AK, Jain A, Singh NK and Rai V (2019) CRISPR-Cas9 directed genome engineering for enhancing salt stress tolerance in rice. Seminars in Cell & Developmental Biology 96: 91-99.
  • Fatima U, Bhorali P, Borah S and Senthil-Kumar M (2019) Perspectives on the utilization of resistance mechanisms from host and nonhost plants for durable protection of Brassica crops against Alternaria blight. PeerJ 7: e7486.
  • Fatima U, Bhorali P and Senthil-Kumar M (2019) Morpho-pathological and global transcriptomic analysis reveals the robust nonhost resistance responses in chickpea interaction with Alternaria brassicae. Molecular Plant-Microbe Interactions 32: 1598-1613.
  • Gautam V, Singh A, Singh S, Verma S and Sarkar AK (2019) Improved method of RNA isolation from laser capture microdissection (LCM)-derived plant tissues. Methods in Molecular Biology 1933: 89-98.
  • Gautam V, Singh A, Verma S, Singh S, Chatterjee S and Sarkar AK (2019) Whole mount in situ localization of miRNAs and target mRNA transcripts in plants. 3 Biotech 9: 193.
  • Gayen D, Barua P, Lande NV, Varshney S, Sengupta S, Chakraborty S and Chakraborty N (2019) Dehydration-responsive alterations in the chloroplast proteome and cell metabolomic profile of rice reveals key stress adaptation responses. Environmental and Experimental Botany 160: 12-24.
  • Gayen D, Gayali S, Barua P, Lande NV, Varshney S, Sengupta S, Chakraborty S and Chakraborty N (2019) Dehydration-induced proteomic landscape of mitochondria in chickpea reveals large-scale coordination of key biological processes. Journal of Proteomics 192: 267-279.
  • Ghosh S, Mirza N, Kanwar P, Tyagi K and Jha G (2019) Genome analysis provides insight about pathogenesis of Indian strains of Rhizoctonia solani in rice. Functional & Integrative Genomics 19: 799-810.
  • Gupta D, Bhattacharjee O, Mandal D, Sen MK, Dey D, Dasgupta A, Kazi TA, Gupta R, Sinharoy S, Acharya K, Chattopadhyay D, Ravichandiran V, Roy S and Ghosh D (2019) CRISPR-Cas9 system: A new-fangled dawn in gene editing. Life Sciences 232: 116636.
  • Hussain A, Yun BW, Kim JH, Gupta KJ, Hyun NI and Loake GJ (2019) Novel and conserved functions of S-nitrosoglutathione reductase in tomato. Journal of Experimental Botany 70: 4877-4886.
  • Jaiswal V, Bandyopadhyay T, Gahlaut V, Gupta S, Dhaka A, Ramchiary N and Prasad M (2019) Genome-wide association study (GWAS) delineates genomic loci for ten nutritional elements in foxtail millet (Setaria italica L.). Journal of Cereal Science 85: 48-55.
  • Jaiswal V, Gupta S, Gahlaut V, Muthamilarasan M, Bandyopadhyay T, Ramchiary N and Prasad M (2019) Genome-wide association study of major agronomic traits in foxtail millet (Setaria italica L.) using ddRAD sequencing. Scientific Reports 9: 5020.
  • Jamsheer KM, Jindal S and Laxmi A (2019) Evolution of TOR-SnRK dynamics in green plants and its integration with phytohormone signaling networks. Journal of Experimental Botany 70: 2239-2259.
  • Jamsheer K M, Singh D, Sharma M, Sharma M, Jindal S, Mannully CT, Shukla BN and Laxmi A (2019) The FCS-LIKE ZINC FINGER 6 and 10 are involved in regulating osmotic stress responses in Arabidopsis. Plant Signaling & Behavior 14: e1592535.
  • Jha UC, Bohra A, Jha R and Parida SK (2019) Salinity stress response and 'omics' approaches for improving salinity stress tolerance in major grain legumes. Plant Cell Reports 38: 255-277.
  • Jimenez-Aleman GH, Almeida-Trapp M, Fernandez-Barbero G, Gimenez-Ibanez S, Reichelt M, Vadassery J, Mithofer A, Caballero J, Boland W and Solano R (2019) Omega hydroxylated JA-Ile is an endogenous bioactive jasmonate that signals through the canonical jasmonate signaling pathway.Biochimica et Biophysica Acta (BBA) Molecular and Cell Biology of Lipids 1864: 158520.
  • Kachewar NR, Gupta V, Ranjan A, Patel HK and Sonti RV (2019) Overexpression of OsPUB41, a rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in rice and Arabidopsis. BMC Plant Biology 19: 530.
  • Kant R, Tyagi K, Ghosh S and Jha G (2019) Host alternative NADH:ubiquinone oxidoreductase serves as susceptibility factor to promote pathogenesis of Rhizoctonia solani in plants. Phytopathology 109: 1741-1750.
  • Kanwar P and Jha G (2019) Alterations in plant sugar metabolism: signatory of pathogen attack. Planta 249: 305-318.
  • Kaur A, Bansal K, Kumar S, Sonti RV and Patil PB (2019) Complete genome dynamics of a dominant-lineage strain of Xanthomonas oryzae pv. oryzae harbouring a novel plasmid encoding a type IV secretion system. Access Microbiology 1: e000063.
  • Kolbert Z, Barroso JB, Brouquisse R, Corpas FJ, Gupta KJ, Lindermayr C, Loake GJ, Palma JM, Petrivalsky M, Wendehenne D and Hancock JT (2019) A forty year journey: The generation and roles of NO in plants. Nitric Oxide 93: 53-70.
  • Kong X, Huang G, Xiong Y, Zhao C, Wang J, Song X, Giri J and Zuo K (2019) IBR5 regulates leaf serrations development via modulation of the expression of PIN1. International Journal of Molecular Sciences 20: 4429.
  • Kumar A, Gautam V, Kumar P, Mukherjee S, Verma S and Sarkar AK (2019) Identification and co-evolution pattern of stem cell regulator miR394s and their targets among diverse plant species. BMC Evolutionary Biology 19: 55.
  • Kumari A, Pathak PK, Bulle M, Igamberdiev AU and Gupta KJ (2019) Alternative oxidase is an important player in the regulation of nitric oxide levels under normoxic and hypoxic conditions in plants. Journal of Experimental Botany 70: 4345-4354.
  • Kumari A, Pathak PK, Loake GJ and Gupta KJ (2019) The PHYTOGLOBIN-NO cycle regulates plant mycorrhizal symbiosis. Trends in Plant Science 24: 981-983.
  • Kumar A, Singh A, Kumar P and Sarkar AK (2019) GAST proteins evolved through successive conjugation of novel motifs and their sub-functionalization. Plant Physiology 180: 998-1012.
  • Kumar K, Neelam K, Singh G, Mathan J, Ranjan A, Brar DS and Singh K (2019) Production and cytological characterization of a synthetic amphiploid derived from a cross between Oryza sativa and Oryza punctata. Genome 62: 705-714.
  • Kumar R, Lee SG, Augustine R, Reichelt M, Vassao DG, Palavalli MH, Allen A, Gershenzon J, Jez JM and Bisht NC (2019) Molecular basis of the evolution of methylthioalkylmalate synthase and diversity of methionine-derived glucosinolates. Plant Cell 31: 1633-1647.
  • Kumar V, Irfan M and Datta A (2019) Manipulation of oxalate metabolism in plants for improving food quality and productivity. Phytochemistry 158: 103-109.
  • Kundu A and Vadassery J (2019) Chlorogenic acid-mediated chemical defense of plants against insect herbivores. Plant Biology 21: 185-189.
  • Kumari S, Yadav S, Patra D, Singh S, Sarkar AK and Panigrahi KCS (2019) Uncovering the molecular signature underlying the light intensity-dependent root development in Arabidopsis thaliana. BMC Genomics 20: 596.
  • Kushwaha NK, Mansi, Sahu PP, Prasad M and Chakrabroty S (2019) Chilli leaf curl virus infection downregulates the expression of the genes encoding chloroplast proteins and stress-related proteins. Physiology and Molecular Biology of Plants 25: 1185-1196.
  • Lokesh V, Manjunatha G, Hegde NS, Bulle M, Puthusseri B, Gupta KJ and Neelwarne B (2019) Polyamine induction in postharvest banana fruits in response to NO donor SNP occurs via L-arginine mediated pathway and not via competitive diversion of S-adenosyl-L-methionine. Antioxidants (Basel) 8: 358.
  • Maji S, Dahiya P, Waseem M, Dwivedi N, Bhat DS, Dar TH and Thakur JK (2019) Interaction map of Arabidopsis mediator complex expounding its topology. Nucleic Acids Research 47: 3904-3920.
  • Mandal D and Sinharoy S (2019) A toolbox for nodule development studies in chickpea: a hairy-root transformation protocol and an efficient laboratory strain of Mesorhizobium sp. . Molecular Plant-Microbe Interactions 32: 367-378.
  • Meena MK, Kumar Vishwakarma N, Tripathi V and Chattopadhyay D (2019) CBL-interacting protein kinase 25 contributes to root meristem development. Journal of Experimental Botany 70: 133-147.
  • Meena MK, Prajapati R, Krishna D, Divakaran K, Pandey Y, Reichelt M, Mathew MK, Boland W, Mithöfer A and Vadassery J (2019) The Ca2+ channel CNGC19 regulates Arabidopsis defense against spodoptera herbivory. Plant Cell 31: 1539-1562.
  • Meena MK, Sardar A and Chattopadhyay D (2019) Decoding and relay of calcium signals by CBL-CIPK module in plants. Proceedings of the Indian National Science Academy 85: 143-156.
  • Mehra P, Pandey BK, Verma L and Giri J (2019) A novel glycerophosphodiester phosphodiesterase improves phosphate deficiency tolerance in rice. Plant, Cell & Environment 42: 1167-1179.
  • Mohanapriya G, Bharadwaj R, Noceda C, Costa JH, Kumar SR, Sathishkumar R, Thiers KLL, Macedo ES, Silva S, Annicchiarico P, Groot SPC, Kodde J, Kumari A, Gupta KJ, Arnholdt-Schmitt B (2019) Alternative oxidase (AOX) senses stress levels to coordinate auxin-induced reprogramming from seed germination to somatic embryogenesis- A role relevant for seed vigor prediction and plant robustness. Frontiers in Plant Science 10: 1134.
  • Mur LAJ, Kumari A, Brotman Y, Zeier J, Mandon J, Cristescu SM, Harren F, Kaiser WM, Fernie AR and Gupta KJ (2019) Nitrite and nitric oxide are important in the adjustment of primary metabolism during the hypersensitive response in tobacco. Journal of Experimental Botany 70: 4571-4582.
  • Muthamilarasan M, Singh NK and Prasad M (2019) Multi-omics approaches for strategic improvement of stress tolerance in underutilized crop species: A climate change perspective. Advances in Genetics 103: 1-38.
  • Narula K, Choudhary P, Ghosh S, Elagamey E, Chakraborty N and Chakraborty S (2019) Comparative nuclear proteomics analysis provides insight into the mechanism of signaling and immune response to blast disease caused by Magnoporthe oryzae in rice. Proteomics 19: e1800188.
  • Narnoliya L, Basu U, Bajaj D, Malik N, Thakro V, Daware A, Sharma A, Tripathi S, Hegde VS, Upadhyaya HD, Singh AK, Tyagi AK and Parida SK (2019) Transcriptional signatures modulating SAM morphometric and plant architectural traits enhance yield and productivity in chickpea. Plant Journal 98: 864-883.
  • Ngangkham U, Parida SK, Singh AK and Mohapatra T (2019) Differential RNA editing of mitochondrial genes in WA-cytoplasmic based male sterile line pusa 6A, and its maintainer and restorer lines.Rice Science 26: 282-289.
  • Pandey S, Kumari A, Shree M, Kumar V, Singh P, Bharadwaj C, Loake GJ, Parida SK, Masakapalli SK and Gupta KJ (2019) Nitric oxide accelerates germination via the regulation of respiration in chickpea. Journal of Experimental Botany 70: 4539-4555.
  • Pandey S, Muthamilarasan M, Sharma N, Chaudhry V, Dulani P, Shweta S, Jha S, Mathur S and Prasad M (2019) Characterization of DEAD-box family of RNA helicases in tomato provides insights into their roles in biotic and abiotic stresses. Environmental and Experimental Botany 158: 107-116.
  • Pandey SP, Singh AP, Srivastava S, Chandrashekar K and Sane AP (2019) A strong early acting wound-inducible promoter, RbPCD1pro, activates cryIAc expression within minutes of wounding to impart efficient protection against insects. Plant Biotechnology Journal 17: 1458-1470.
  • Pareek A, Rathi D, Mishra D, Chakraborty S and Chakraborty N (2019) Physiological plasticity to high temperature stress in chickpea: Adaptive responses and variable tolerance. Plant Science 289: 110258.
  • Pislariu CI, Sinharoy S, Torres-Jerez I, Nakashima J, Blancaflor EB and Udvardi MK (2019) The nodule-specific PLAT-domain protein NPD1 is required for nitrogen-fixing symbiosis. Plant Physiology 180: 1480-1497.
  • Prasad A, Sharma N, Muthamilarasan M, Rana S and Prasad M (2019) Recent advances in small RNA mediated plant-virus interactions. Critical Reviews in Biotechnology 39: 587-601.
  • Praveen A, Pandey A and Gupta M (2019) Nitric oxide alters nitrogen metabolism and PIN gene expressions by playing protective role in arsenic challenged Brassica juncea L. . Ecotoxicology and Environmental Safety 176: 95-107.
  • P Singh, AP Singh, SK Tripathi, V Kumar and AP Sane (2019) Petal abscission in roses is associated with the activation of a truncated version of the animal PDCD4 homologue, RbPCD1. Plant Science 288: 110242.
  • Rathi D, Gayali S, Pareek A, Chakraborty S and Chakraborty N (2019) Transcriptome profiling illustrates expression signatures of dehydration tolerance in developing grasspea seedlings. Planta 250: 839-855.
  • Rathi D, Pareek A, Zhang T, Pang Q, Chen S, Chakraborty S and Chakraborty N (2019) Metabolite signatures of grasspea suspension-cultured cells illustrate the complexity of dehydration response. Planta 250: 857-871.
  • Saggu SK, Jha G and Mishra PC (2019) Enzymatic degradation of biofilm by metalloprotease from Microbacterium sp. SKS10. Frontiers in Bioengineering and Biotechnology 7: 192.
  • Sen B, Rastogi A, Nath R, Shasthry SM, Pamecha V, Pandey S, Gupta KJ, Sarin SK, Trehanpati N and Ramakrishna G (2019) Senescent hepatocytes in decompensated liver show reduced UPRMT and its key player, CLPP, attenuates senescence in vitro. Cellular and Molecular Gastroenterology and Hepatology 8: 73-94.
  • Sharma A, Basu U, Malik N, Daware A, Thakro V, Narnoliya L, Bajaj D, Tripathi S, Hegde VS, Upadhyaya HD, Tyagi AK and Parida SK (2019) Genome-wide cis-regulatory signatures for modulation of agronomic traits as exemplified by drought yield index (DYI) in chickpea. Functional & Integrative Genomics 19: 973-992.
  • Sharma M, Banday ZZ, Shukla BN and Laxmi A (2019) Glucose-regulated HLP1 acts as a key molecule in governing thermomemory. Plant Physiology 180: 1081-1100.
  • Singh A, Zahra S, Das D and Kumar S (2019) AtFusionDB: a database of fusion transcripts in Arabidopsis thaliana. Database 2019: bay135.
  • Singh P, Ara H, Tayyeba S, Pandey C and Sinha AK (2019) Development of efficient protocol for rice transformation overexpressing MAP kinase and their effect on root phenotypic traits. Protoplasma 256: 997-1011.
  • Singh P, Mathew IE, Verma A, Tyagi AK and Agarwal P (2019) Analysis of rice proteins with DLN repressor Motif/S. International Journal of Molecular Sciences 20: 1600.
  • Singh P, Singh AP and Sane AP (2019) Differential and reciprocal regulation of ethylene pathway genes regulates petal abscission in fragrant and non-fragrant roses. Plant Science 280: 330-339.
  • Singh RK, Shweta S, Muthamilarasan M, Rani R and Prasad M (2019) Study on aquaporins of Setaria italica suggests the involvement of SiPIP3;1 and SiSIP1;1 in abiotic stress response. Functional & Integrative Genomics 19: 587-596.
  • Sinha R, Irulappan V, Mohan-Raju B, Suganthi A and Senthil-Kumar M (2019) Impact of drought stress on simultaneously occurring pathogen infection in field-grown chickpea. Scientific Reports 9: 5577.
  • Sood P, Singh RK and Prasad M (2019) Millets genetic engineering: the progress made and prospects for the future. Plant Cell, Tissue and Organ Culture 137: 421-439.
  • Swain DM, Sahoo RK, Chandan RK, Ghosh S, Kumar R, Jha G and Tuteja N (2019) Concurrent overexpression of rice G-protein β and γ subunits provide enhanced tolerance to sheath blight disease and abiotic stress in rice. Planta 250: 1505-1520.
  • Vadassery J, Ballhorn DJ, Fleming SR, Mazars C, Pandey SP, Schmidt A, Schuman MC, Yeh Kai-Wun, Yilamujiang A and Mithofer A (2019) Neomycin: an effective inhibitor of jasmonate-induced reactions in plants. Journal of Plant Growth Regulation 38: 713-722.
  • Vega-Mas I, Rossi MT, Gupta KJ, Gonzalez-Murua C, Ratcliffe RG, Estavillo JM and Gonzalez-Moro MB (2019) Tomato roots exhibit in vivo glutamate dehydrogenase aminating capacity in response to excess ammonium supply. Journal of Plant Physiology 239: 83-91.
  • Vemanna RS, Bakade R, Bharti P, Kumar MKP, Sreeman SM, Senthil-Kumar M and Makarla U (2019) Cross-talk signaling in rice during combined drought and bacterial blight stress. Frontiers in Plant Science 10: 193.
  • Verma S and Bhatia S (2019) A comprehensive analysis of the B3 superfamily identifies tissue-specific and stress-responsive genes in chickpea (Cicer arietinum L.). 3 Biotech 9: 346.
  • Verma S and Bhatia S (2019) Analysis of genes encoding seed storage proteins (SSPs) in chickpea (Cicer arietinum L.) reveals co-expressing transcription factors and a seed-specific promoter. Functional & Integrative Genomics 19: 373-390.
  • Verma S, Gautam G and Sarkar AK (2019) Improved laser capture microdissection (LCM)-based method for isolation of RNA, including miRNA and expression analysis in woody apple bud meristem. Planta 249: 2015-2020.
  • Vishwakarma A, Wany A, Pandey S, Bulle M, Kumari A, Kishorekumar R, Igamberdiev AU, Mur LAJ and Gupta KJ (2019) Current approaches to measure nitric oxide in plants. Journal of Experimental Botany 70: 4333-4343.
  • Wany A, Gupta AK, Kumari A, Mishra S, Singh N, Pandey S, Vanvari R, Igamberdiev AU, Fernie AR and Gupta KJ (2019) Nitrate nutrition influences multiple factors in order to increase energy efficiency under hypoxia in Arabidopsis. Annals of Botany 123: 691-705.
Book Chapters:
  • Dixit SK, Gupta A and Senthil-Kumar M (2019) Current understanding of regulation of GBF3 under abiotic and biotic stresses and its potential role in combined stress tolerance. In: Ramakrishna A, Gill SS (eds), Metabolic Adaptations in Plants During Abiotic Stress. CRC Press, Boca Raton, pp 267-272.
  • Morel Jean-Benoit, Senthil-Kumar M and Ballini E (eds) (2019) Biological mechanisms of plant interactions with a combination of biotic and abiotic stresses. Frontiers in Plant Science, Frontiers Media S.A., Lausanne, pp 1-131.
  • Narayan A, Singh A and Kumar S (2019) Protein homology modeling in phytochemical research. In: Kumar S, Egbuna C (eds), Phytochemistry: An in-silico and in-vitro Update. Springer, Singapore, pp 461-478.
  • Sagar S and Singh A (2019) Abscisic acid, a principal regulator of plant abiotic stress responses. In: Khan I, Reddy SP, Ferrante A, Khan NS (eds), Plant Signaling Molecules: Role and Regulation under Stressful Environments. Elsevier, pp 341-353.
  • Singh A and Kumar S (2019) Study of plant exclusive virus-derived small interfering RNAs. In: Kumar S, Egbuna C (eds), Phytochemistry: An in-silico and in-vitro Update. Springer, Singapore, pp 535-544.
  • Singh A, Zahra S and Kumar S (2019) In-silico tools in phytochemical research. In: Kumar S, Egbuna C (eds), Phytochemistry: An in-silico and in-vitro Update. Springer, Singapore, pp 351-372.
  • Zahra S and Kumar S (2019) PtRFdb: Plant tRNA-derived fragments database. In: Kumar S, Egbuna C (eds), Phytochemistry: An in-silico and in-vitro Update. Springer, Singapore, pp 511-519.
Conference Proceedings:
  • Deb S, Patel HK and Sonti RV (2019) Immune response induction in rice due to co-expression of XopQ and XopX. In: 18th Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI, Glasgow, Scotland, July 14-18, 2019). (Abstract) Molecular Plant-Microbe Interactions 32(10): S1.111-112.
  • Ghosh S, Kanwar P and Jha G (2019) Understanding the molecular intricacies of rice-Rhizoctonia solani interactions. In: 18th Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI, Glasgow, Scotland, July 14-18, 2019). (Abstract) Molecular Plant-Microbe Interactions 32(10): S1.2.
  • Madhavan VN, Patel HK, Patil PB and Sonti RV (2019) Phase variation in rice pathogen Xanthomonas oryzae pv. oryzae. In: 18th Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI, Glasgow, Scotland, July 14-18, 2019). (Abstract) Molecular Plant-Microbe Interactions 32(10): S1.8.
  • Malukani KK, Ranjan A, Hota SJ, Patel HK and Sonti RV (2019) OsWAKL21, a putative receptor of rice cell wall damage activates alternate signaling in rice and Arabidopsis to induce immunity. In: 18th Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI, Glasgow, Scotland, July 14-18, 2019). (Abstract) Molecular Plant-Microbe Interactions 32(10): S1.70.
  • Swain DM, Yadav S, Tyagi I, Kumar R, Kumar R, Ghosh S, Das J and Jha G (2019) Burkholderia gladioli strain NGJ1 deploys a prophage tail-like protein to feed on fungi. In: 18th Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI, Glasgow, Scotland, July 14-18, 2019). (Abstract) Molecular Plant-Microbe Interactions 32(10): S1.10.
Patents:
  • Kapuganti JG, Bulle M and Kumari A (2019) Method for extending shelf-life of fruits and vegetables using hypoxia induced nitric oxide [Indian Patent No. 201911009428 (provisional)].
  • Jha G, Yadav SK and Swain DM (2019) Novel Protein Against Fungal Pathogens [Canada (3030660) (January 11, 2019)].
  • Jha G, Yadav SK and Swain DM (2019) Novel Protein Against Fungal Pathogens [Australia (2017301012) (January 24, 2019)].
Popular articles/ latest news:
  • Datta S, Dhillon BS, Gautam PL, Karihaloo JL, Mahadevappa M, Mayee CD, Padmanaban G, Parida A, Paroda RS, Sharma M, Sharma TR, Singh NK, Singh RB, Sonti RV, Tyagi AK, Varma JL and Veluthambi K (2019) India needs genetic modification technology in agriculture. Current Science 117: 390-394.

  • Aggarwal PR, Nag P, Choudhary P, Chakraborty N and Chakraborty S (2018) Genotype-independent Agrobacterium rhizogenes-mediated root transformation of chickpea: a rapid and efficient method for reverse genetics studies. Plant Methods 14: 55.
  • Ajmera I, Shi J, Giri J, Wu P, Stekel DJ, Lu C and Hodgman TC (2018) Regulatory feedback response mechanisms to phosphate starvation in rice. NPJ Systems Biology and Applications 4: 4.
  • Ashraf N, Basu S, Narula K, Ghosh S, Tayal R, Gangisetty N, Biswas S, Aggarwal PR, Chakraborty N, Chakraborty S (2018) Integrative network analyses of wilt transcriptome in chickpea reveal genotype dependent regulatory hubs in immunity and susceptibility. Scientific Reports 8: 6528.
  • Babu S and Yadav G (2018) Robustness through regime flips in collapsing ecological networks. In: Aiello L, Cherifi C, Cherifi H, Lambiotte R, Lio P, Rocha L (eds), Complex Networks and Their Applications VII, COMPLEX NETWORKS 2018. Studies in Computational Intelligence, vol 812. Springer, Cham, pp 841-853.
  • Badmi R, Sheikh AH, Bhagat PK, Verma D, Noryang S and Sinha AK (2018) Possible role of plant MAP kinases in the biogenesis and transcription regulation of rice microRNA pathway factors. Plant Physiology and Biochemistry 129: 238-243.
  • Basu U, Srivastava R, Bajaj D, Thakro V, Daware A, Malik N, Upadhyaya HD and Parida SK (2018) Genome-wide generation and genotyping of informative SNPs to scan molecular signatures for seed yield in chickpea. Scientific Reports 8: 13240.
  • Berger A, Brouquisse R, Pathak PK, Hichri I, Singh I, Bhatia S, Boscari A, Igamberdiev AU and Gupta KJ (2018) Pathways of nitric oxide metabolism and operation of phytoglobins in legume nodules: missing links and future directions. Plant, Cell & Environment 41: 2057-2068.
  • Bhatia C, Pandey A, Reddy Gaddam S, Hoecker U and Trivedi PK (2018) Low temperature enhanced flavonol synthesis requires light-associated regulatory components in Arabidopsis thaliana. Plant and Cell Physiology (In Press).
  • Bhatia H, Khemka N, Jain M and Garg R (2018) Genome-wide bisulphite-sequencing reveals organ-specific methylation patterns in chickpea. Scientific Reports 8: 9704.
  • Bhosale R, Giri J, Pandey BK, Giehl RFH, Hartmann A, Traini R, Truskina J, Leftley N, Hanlon M, Swarup K, Rashed A, Voβ U, Alonso J, Stepanova A, Yun J, Ljung K, Brown KM, Lynch JP, Dolan L, Vernoux T, Bishopp A, Wells D, Von Wirén N, Bennett MJ and Swarup R (2018) A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate. Nature Communications 9: 1409.
  • Chaliha C, Nath BK, Verma PK and Kalita E (2018) Synthesis of functionalized Cu:ZnS nanosystems and its antibacterial potential. Arab. J. Chem. 12: 515-524.
  • Dirk LMA, Kumar S, Majee M and Downie AB (2018) PHYTOCHROME INTERACTING FACTOR1 interactions leading to the completion or prolongation of seed germination. Plant Signaling & Behavior 13: e1525999.
  • Ghorai P, Irfan M, Narula A and Datta A (2018) A comprehensive analysis of Candida albicans phosphoproteome reveals dynamic changes in phosphoprotein abundance during hyphal morphogenesis. Applied Microbiology and Biotechnology. 102: 9731-9743.
  • Ghosh S, Kanwar P and Jha G (2018) Identification of candidate pathogenicity determinants of Rhizoctonia solani AG1-IA, which causes sheath blight disease in rice. Current Genetics (In Press).
  • Giri J, Bhosale R, Huang G, Pandey BK, Parker H, Zappala S, Yang J, Dievart A, Bureau C, Ljung K, Price A, Rose T, Larrieu A, Mairhofer S, Sturrock CJ, White P, Dupuy L, Hawkesford M, Perin C, Liang W, Peret B, Hodgman CT, Lynch J, Wissuwa M, Zhang D, Pridmore T, Mooney SJ, Guiderdoni E, Swarup R and Bennett MJ (2018) Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nature Communications 9: 1408.
  • Goel R, Kumari R, Singh V, Kumari R, Srivastava S and Kumar S (2018) Perspectives of the Artemisia annua dry leaf therapy (ALT) for malaria and of its re-purposement as an affordable cure for artemisinin-treatable illnesses. Proceedings of the Indian National Science Academy 84: 731-780.
  • Gupta A, Kamalachandran D, Longchar B and Senthil-Kumar M (2018) Impact of soil moisture regimes on wilt disease in tomato: current understanding. In: Wani SH (ed), Biochemical, Physiological and Molecular Avenues for Combating Abiotic Stress Tolerance in Plants. Academic Press, pp 73-82.
  • Gupta KJ, Kumari A, Florez-Sarasa I, Fernie AR and Igamberdiev AU (2018) Interaction of nitric oxide with the components of plant mitochondrial electron transport chain. Journal of Experimental Botany 69: 3413-3424.
  • Gupta N, Singh A, Zahra S and Kumar S (2018) PtRFdb: a database for plant transfer RNA-derived fragments. Database 2018: bay063.
  • Gupta N, Zahra S, Singh A and Kumar S (2018) PVsiRNAdb: a database for plant exclusive virus-derived small interfering RNAs. Database 2018: bay105.
  • Huang G, Liang W, Sturrock CJ, Pandey BK, Giri J, Mairhofer S, Wang D, Muller L, Tan H, York LM, Yang J, Song Y, Kim YJ, Qiao Y, Xu J, Kepinski S, Bennett MJ and Zhang D (2018) Rice actin binding protein RMD controls crown root angle in response to external phosphate. Nature Communications 9: 2346.
  • Irulappan V and Senthil-Kumar M (2018) Morpho-physiological traits and molecular intricacies associated with tolerance to combined drought and pathogen stress in plants. In: Gosal S, Wani S (eds), Biotechnologies of Crop Improvement, Volume 3. Springer, Switzerland, pp 59-74.
  • Jalmi SK, Bhagat PK, Verma D, Noryang S, Tayyeba S, Singh K, Sharma D and Sinha AK (2018) Traversing the links between heavy metal stress and plant signaling. Frontiers in Plant Science 9: 12
  • Jamsheer KM, Sharma M, Singh D, Mannully CT, Jindal S, Shukla BN and Laxmi A (2018) FCS-like zinc finger 6 and 10 repress SnRK1 signalling in Arabidopsis. Plant Journal 94: 232-245.
  • Jamsheer KM, Shukla BN, Jindal S, Gopan N, Mannully CT and Laxmi A (2018) The FCS-like zinc finger scaffold of the kinase SnRK1 is formed by the coordinated actions of the FLZ domain and intrinsically disordered regions. Journal of Biological Chemistry 293: 13134-13150.
  • Jha UC, Jha R, Bohra A, Parida SK, Kole PC, Thakro V, Singh D and Singh NP (2018) Population structure and association analysis of heat stress relevant traits in chickpea (Cicer arietinum L.). 3 Biotech 8: 43.
  • Kaashyap M, Ford R, Kudapa H, Jain M, Edwards D, Varshney R and Mantri N (2018) Differential regulation of genes involved in root morphogenesis and cell wall modification is associated with salinity tolerance in chickpea. Scientific Reports 8: 4855.
  • Kryvoruchko IS, Routray P, Sinharoy S, Torres-Jerez I, Tejada-Jimenez M, Finney LA, Nakashima J, Pislariu CI, Benedito VA, Gonzalez-Guerrero M, Roberts DM and Udvardi MK (2018) An iron-activated citrate transporter, MtMATE67, is required for symbiotic nitrogen fixation. Plant Physiology 176: 2315-2329.
  • Kumar K, Purayannur S, Kaladhar VC, Parida SK and Verma PK (2018) mQTL-seq and classical mapping implicates the role of an AT-HOOK MOTIF CONTAINING NUCLEAR LOCALIZED (AHL) family gene in ascochyta blight resistance of chickpea. Plant, Cell & Environment 41: 2128-2140.
  • Kumar M, Verma S, Gazara RK, Kumar M, Pandey A, Verma PK and Thakur IS (2018) Genomic and proteomic analysis of lignin degrading and polyhydroxyalkanoate accumulating beta-proteobacterium Pandoraea sp ISTKB. Biotechnology for Biofuels 11: 154.
  • Kumar R and Bisht NC (2018) Duplicated RGS (Regulator of G-protein signaling) proteins exhibit conserved biochemical but differential transcriptional regulation of heterotrimeric G-protein signaling in Brassica species. Scientific Reports 8: 2176.
  • Kumar R, Swain DM, Yadav SK, Tyagi I, Kumar R, Das J, Ghosh S and Jha G (2018) Bacteria-fungal confrontation and fungal growth prevention assay. Bio-Protocol 8: e2694.
  • Kumar R, Yadav SK, Swain DM and Jha G (2018) Burkholderia gladioli strain NGJ1 deploys a prophage tail-like protein for mycophagy. Microbial Cell 5: 116 - 118.
  • Kumar V, Waseem M, Dwivedi N, Maji S, Kumar A and Thakur JK (2018) KIX domain of AtMed15a, a Mediator subunit of Arabidopsis, is required for its interaction with different proteins. Plant Signaling & Behavior 13: e1428514.
  • Kundu A, Mishra S and Vadassery J (2018) Spodoptera litura-mediated chemical defense is differentially modulated in older and younger systemic leaves of Solanum lycopersicum. Planta 248: 981-997.
  • Majee M, Kumar S, Kathare P, Wu S, Gingerich D, Nayak N, Salaita L, Dinkins R, Martin K, Goodin M, Dirk L, Lloyd T, Zhu L, Chappell J, Hunt A, Vierstra R, Huq E and Downie AB (2018) Kelch f-box protein positively influences Arabidopsis seed germination by targeting phytochrome-interacting factor1. Proceedings of the National Academy of Sciences, USA 115: E4120-E4129.
  • Mandal A, Mishra AK, Dulani P, Muthamilarasan M, Shweta S and Prasad M (2018) Identification, characterization, expression profiling, and virus-induced gene silencing of armadillo repeat-containing proteins in tomato suggest their involvement in tomato leaf curl New Delhi virus resistance. Functional & Integrative Genomics 18: 101-111.
  • Mandal A, Sharma N, Muthamilarasan M and Prasad M (2019) Ubiquitination: a tool for plant adaptation to changing environments. The Nucleus 61: 253�260.
  • Mathew IE and Agarwal P (2018) May the fittest protein evolve: favoring the plant-specific origin and expansion of NAC transcription factors. BioEssays (In Press).
  • Mishra A, Jha G and Thakur IS (2018) Draft genome sequence of Zhihengliuella sp. strain ISTPL4, a psychrotolerant and halotolerant bacterium isolated from pangong lake, India. Microbiology Resource Announcements 6: e01533-17.
  • Mishra D, Shekhar S, Chakraborty S and Chakraborty N (2018) Carboxylate clamp tetratricopeptide repeat (TPR) domain containing Hsp90 cochaperones in Triticeace: an insight into structural and functional diversification. Environmental and Experimental Botany 155: 31-44.
  • Mishra D, Shekhar S, Singh D, Chakraborty S and Chakraborty N (2018) Heat shock proteins and abiotic stress tolerance in plants. In: Asea AAA, Kaur P (eds), Regulation of Heat Shock Protein Responses, Vol.13. Springer International Publishing, Switzerland, pp 41-69.
  • Nagpal N, Sharma S, Maji S, Durante G, Ferracin M, Thakur JK and Kulshreshtha R (2018) Essential role of MED1 in the transcriptional regulation of ER-dependent oncogenic miRNAs in breast cancer. Scientific Reports 8: 11805.
  • Ostria-Gallardo E, Ranjan A, Ichihashi Y, Corcuera LJ and Sinha NR (2018) Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions. New Phytologist 220: 278-287.
  • Patel MK, Das S and Thakur JK (2018) GC-MS-based analysis of methanol: chloroform-extracted fatty acids from plant tissues. Bio-Protocol 8: e3014.
  • Pandey A, Chakraborty S and Chakraborty N (2018) Nuclear proteome: Isolation of intact nuclei, extraction of nuclear proteins, and 2-DE analysis.Methods in Molecular Biology 1696: 41-55.
  • Pandey S, Sahu PP, Kulshreshtha R and Prasad M (2018) Role of host transcription factors in modulating defense response during plant-virus interaction. In: Patil BL (ed), Genes, Genetics and Transgenics for Virus Resistance in Plants. Caister Academic Press, pp 25-54.
  • Parveen S, Pandey A, Jameel N, Chakraborty S and Chakraborty N (2018) Transcriptional regulation of chickpea ferritin CaFer1 influences its role in iron homeostasis and stress response. Journal of Plant Physiology 222: 9-16.
  • Pillai SE, Kumar C, Patel HK and Sonti RV (2018) Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection. BMC Plant Biology 18: 177.
  • Potshangbam M, Sahoo D, Verma P, Verma S, Kalita MC and Indira Devi S. (2018) Draft Genome Sequence of Bacillus altitudinis Lc5, a biocontrol and plant growth-promoting endophyte strain isolated from indigenous black rice of Manipur. Genome Announcements 6: e00601-18.
  • Priya P, Yadav A, Chand J and Yadav G (2018) Terzyme: a tool for identification and analysis of the plant terpenome. Plant Methods 14: 4.
  • Rajkumar MS, Garg R and Jain M (2018) Genome-wide discovery of DNA polymorphisms among chickpea cultivars with contrasting seed size/weight and their functional relevance. Scientific Reports 8: 16795.
  • Rao V, Petla B P, Verma P, Salvi P, Kamble NU, Ghosh S, Kaur H, Saxena SC and Majee M (2018) Arabidopsis SKP1-like protein 13 (ASK13) positively regulates seed germination and seedling growth under abiotic stresses. Journal of Experimental Botany 69: 3899-3915.
  • Rathi D, Pareek A, Gayali S, Chakraborty S and Chakraborty N (2018) Variety-specific nutrient acquisition and dehydration-induced proteomic landscape of grasspea (Lathyrus sativus L.). Journal of Proteomics 183: 45-57.
  • Saddhe AA, Shweta, Mosa KA, Kumar K, Prasad M and Dhankher OP (2018) Genome-wide characterization of Major Intrinsic Protein (MIP) gene family in Brachypodium distachyon. Current Bioinformatics 13: 536-552.
  • Salvi P, Kamble NU and Majee M (2018) Stress inducible galactinol synthase of chickpea (CaGolS) implicates in heat and oxidative stress tolerance through reducing stress induced excessive reactive oxygen species accumulation. Plant and Cell Physiology 59: 155-166.
  • Sarkar Das S, Yadav S, Singh A, Gautam V, Sarkar AK, Nandi AK, Karmakar P, Majee M and Sanan-Mishra N (2018) Expression dynamics of miRNAs and their targets in seed germination conditions reveals miRNA-ta-siRNA crosstalk as regulator of seed germination. Scientific Reports 8: 1233.
  • Senthil-Kumar M, Wang M, Chang J, Ramegowda V, Pozo OD, Liu Y, Doraiswamy V, Lee HK, Ryu CM, Wang K, Xu P, Eck JV, Chakravarthy S, Dinesh-Kumar SP, Martin GB and Mysore KS(2018) Virus-induced gene silencing database for phenomics and functional genomics in Nicotiana benthamiana. Plant Direct 2: e00055.
  • Sharma N, Sahu PP, Kulshreshtha R and Prasad M (2018) Surfacing the role of epigenetics in host-virus interaction. In: Patil BL (ed), Genes, Genetics and Transgenics for Virus Resistance in Plants. Caister Academic Press, pp 55-86.
  • Singh AP, Fridman Y, Holland N, Ackerman-Lavert M, Zananiri R, Jaillais Y, Henn A and Savaldi-Goldstein S (2018) Interdependent nutrient availability and steroid hormone signals facilitate root growth plasticity. Developmental Cell 46: 59-72.e1-e4.
  • Singh A, Gautam V, Singh S, Sarkar Das S, Verma S, Mishra V, Mukherjee S and Sarkar AK (2018) Plant small RNAs: advancement in the understanding of biogenesis and role in plant development. Planta (In Press).
  • Singh A, Sagar S and Biswas DK (2018) Calcium dependent protein kinase, a versatile player in plant stress management and development. Critical Reviews in Plant Sciences (In Press).
  • Singh A, Yadav AK, Kaur K, Sanyal SK, Jha SK, Fernandes JL, Sharma P, Tokas I, Pandey A, Luan S and Pandey GK (2018) Protein phosphatase 2C, AP2C1 interacts with and negatively regulates the function of CIPK9 under potassium deficient conditions in Arabidopsis. Journal of Experimental Botany 69: 4003-4015.
  • Singh N, Phukan T, Sharma PL, Kabyashree K, Barman A, Kumar R, Sonti RV, Genin S and Ray SK (2018) An innovative root inoculation method to study Ralstonia solanacearum pathogenicity in tomato seedlings. Phytopathology 108: 436-442.
  • Singh R, Lee S, Ortega L, Blancaflor E, Ramu VS, Senthil-Kumar M, Rojas CM and Mysore KS (2018) Two chloroplast-localized proteins: AtNHR2A and AtNHR2B, contribute to callose deposition during nonhost disease resistance in Arabidopsis. Molecular Plant-Microbe Interactions 31: 1280-1290.
  • Singh V, Singh AP, Bhadoria J, Giri J, Singh J, T VV and Sharma PC (2018) Differential expression of salt-responsive genes to salinity stress in salt-tolerant and salt-sensitive rice (Oryza sativa L.) at seedling stage. Protoplasma (In Press).
  • Sinha R and Senthil-Kumar M (2018) Possible strategies for the establishment of VIGS protocol in chickpea. In: Patil BL (ed), Genes, Genetics and Transgenics for Virus Resistance in Plants. Caister Academic Press, pp 327-341.
  • Soda N, Verma L and Giri J (2018) CRISPR-Cas9 based plant genome editing: Significance, opportunities and recent advances. Plant Physiology and Biochemistry 131: 2-11.
  • Verma JK, Wardhan V, Singh D, Chakraborty S and Chakraborty N (2018) Genome-wide identification of the Alba gene family in plants and stress-responsive expression of the rice Alba genes. Genes 9: 183.
  • Vishwakarma A, Kumari A, Mur LAJ and Gupta KJ (2018) A discrete role for alternative oxidase under hypoxia to increase nitric oxide and drive energy production. Free Radical Biology and Medicine 122: 40-51.
  • Wany A, Foyer CH and Gupta KJ (2018) Nitrate, NO and ROS signaling in stem cell homeostasis. Trends in Plant Science 23: 1041-1044.
  • Wany A and Gupta KJ (2018) Reactive oxygen species, nitric oxide production and antioxidant gene expression during development of aerenchyma formation in wheat. Plant Signaling & Behavior 13: e1428515.
  • Wu P, Yang S, Singh S, Qin F, Kumar S, Wang L, Ma D and Li H (2018) The landscape and implications of chimeric RNAs in cervical cancer. EBioMedicine 37: 158-167.
  • Yadconfereav CB, Pandey G, Muthamilarasan M and Prasad M (2018) Epigenetics and epigenomics of plants. In: Varshney RK, Pandey MK, Chitikineni A (eds), Advances in Biochemical Engineering/Biotechnology: Plant Genetics and Molecular Biology, Springer International Publishing, Switzerland, 164, pp 237-261.

  • Augustine R and Bisht NC (2017) Regulation of glucosinolate metabolism: From model plant Arabidopsis thaliana to Brassica crops. In: Ramawat KG, Merillon Jean-Michel (eds), Reference Series in Phytochemistry: Glucosinolates, Springer International Publishing, Switzerland, pp 163-199.
  • Balyan S, Kumar M, Mutum RD, Raghuvanshi U, Agarwal P, Mathur S and Raghuvanshi S (2017) Identification of miRNA-mediated drought responsive multi-tiered regulatory network in drought tolerant rice, Nagina 22. Scientific Reports 7: 15446.
  • Bandyopadhyay T, Jaiswal V and Prasad M (2017) Nutrition potential of foxtail millet in comparison to other millets and major cereals. In: Prasad M (ed), The Foxtail Millet Genome. Springer International Publishing, Switzerland, pp 123-135.
  • Bandyopadhyay T, Mehra P, Hairat S and Giri J (2017) Morpho-physiological and transcriptome profiling reveal novel zinc deficiency-responsive genes in rice. Functional & Integrative Genomics 17: 565-581
  • Bandyopadhyay T, Muthamilarasan M and Prasad M (2017) Millets for next generation climate-smart agriculture. Frontiers in Plant Science 8: 1266.
  • Barua P, Gayen D, Lande NV, Chakraborty S and Chakraborty N (2017) Global proteomic profiling and identification of stress-responsive proteins using two-dimensional gel electrophoresis. Methods in Molecular Biology 1631: 163-179.
  • Bhadouria J, Singh AP, Mehra P, Verma L, Srivastawa R, Parida SK and Giri J (2017) Identification of purple acid phosphatases in chickpea and potential roles of CaPAP7 in seed phytate accumulation. Scientific Reports 7: 11012.
  • Bhattacharjee A, Sharma R and Jain M (2017) Over-expression of OsHOX24 confers enhanced susceptibility to abiotic stresses in transgenic rice via modulating stress-responsive gene expression. Frontiers in Plant Science 8: 628.
  • Choudhary A, Gupta A, Ramegowda V and Senthil-Kumar M (2017) Transcriptomic changes under combined drought and nonhost bacteria reveal novel and robust defenses in Arabidopsis thaliana. Environmental and Experimental Botany 139 : 152-164.
  • Daware AV, Srivastava R, Singh AK, Parida SK and Tyagi AK (2017) Regional association analysis of metaQTLs delineates candidate grain size genes in rice. Frontiers in Plant Science 8: 807.
  • Dwivedi V, Parida SK, Chattopadhyay D (2017) A repeat length variation in myo-inositol monophosphatase gene contributes to seed size trait in chickpea. Scientific Reports. 7:4764
  • Elagamey E, Narula K, Sinha A, Ghosh S, Abdellatef MAE, Chakraborty N and Chakraborty S (2017) Quantitative extracellular matrix proteomics suggests cell wall reprogramming in host-specific immunity during vascular wilt caused by Fusarium oxysporum in chickpea. Proteomics 17: 1600374.
  • Elagamey E, Sinha A, Narula K, Abdellatef MAE, Chakraborty N and Chakraborty S (2017) Molecular dissection of extracellular matrix proteome reveals discrete mechanism regulating Verticillium dahliae triggered vascular wilt disease in potato. Proteomics 17: 1600373.
  • Fatima U and Senthil-Kumar M (2017) Tissue water status and bacterial pathogen infection: how they are correlated?. In: Senthil-Kumar M (ed), Plant Tolerance to Individual and Concurrent Stresses, Springer (India) Pvt. Ltd., pp 165-178.
  • Garg R, Singh VK, Rajkumar MS, Kumar V and Jain M (2017) Global transcriptome and co-expression network analyses reveal cultivar-specific molecular signatures associated with seed development and seed size/weight determination in chickpea. Plant Journal 91: 1088-1107.​
  • Gautam V, Singh A, Verma S, Kumar A, Kumar P, Mahima, Singh S, Mishra V and Sarkar AK (2017) Role of miRNAs in root development of model plant Arabidopsis thaliana. Indian Journal of Plant Physiology 22: 382-392.
  • Ghosh S, Irfan M and Datta A (2017) Application of RNA silencing in improving plant traits for industrial use. In: Dalmay T (ed), Plant gene silencing: mechanisms and applications, CABI, pp 128-146.
  • Ghosh S, Kanwar P and Jha G (2017) Alterations in rice chloroplast integrity, photosynthesis and metabolome associated with pathogenesis of Rhizoctonia solani. Scientific Reports 7: 41610.
  • Ghosh S, Kaushik A, Khurana S, Varshney A, Singh AK, Dahiya P, Thakur JK, Sarin SK, Gupta D, Malhotra P, Mukherjee SK and Bhatnagar RK (2017) An RNAi-based high-throughput screening assay to identify small molecule inhibitors of hepatitis B virus replication. Journal of Biological Chemistry 292: 12577 - 12588.
  • Gupta A and Senthil-Kumar M (2017) Concurrent stresses are perceived as new state of stress by the plants: overview of impact of abiotic and biotic stress combinations. In: Senthil-Kumar M (ed), Plant Tolerance to Individual and Concurrent Stresses, Springer (India) Pvt. Ltd., pp 1-15.
  • Gupta A and Senthil-Kumar M (2017) Transcriptome changes in Arabidopsis thaliana infected with Pseudomonas syringae during drought recovery. Scientific Reports 7: 9124.
  • Gupta A, Hisano H, Hojo Y, Matsuura T, Ikeda Y, Mori IC and Senthil-Kumar M (2017) Global profiling of phytohormone dynamics during combined drought and pathogen stress in Arabidopsis thaliana reveals ABA and JA as major regulators. Scientific Reports 7: 4017.
  • Gupta S, Nawaz K, Parween S, Roy R, Sahu K, Pole AK, Khandal H, Srivastava R, Parida SK and Chattopadhyay D (2017) Draft genome sequence of Cicer reticulatum L., the wild progenitor of chickpea provides a resource for agronomic trait improvement. DNA Res. 24: 1-10.
  • Huang R, Kumar S and Li H (2017) Absence of correlation between chimeric RNA and aging. Genes 8: 386.
  • Irfan M and Datta A (2017) Improving food nutritional quality and productivity through genetic engineering. International Journal of Cell Science & Molecular Biology 2: 555576.
  • Kamthan A, Kamthan M and Datta A (2017) Biotechnology for drug discovery and crop improvement. The Nucleus 60: 237-242.
  • Kamthan A, Kamthan M and Datta A (2017) Expression of C-5 sterol desaturase from an edible mushroom in fisson yeast enhances its ethanol and thermotolerance. PLoS One 12: e0173381.
  • Kaundal A, Ramu VS, Oh S, Lee S, Pant B, Lee HK, Rojas CM, Senthil-Kumar M and Mysore KS (2017) General Control Non-repressible-4 (GCN4) degrades 14-3-3 and the RIN4 complex to regulate stomatal aperture with implications on nonhost disease resistance and drought tolerance. The Plant Cell 29: 2233-2248.
  • Khan AU, Beg AZ and Verma PK (2017) Draft genome sequence of the first NDM-4-producing Escherichia coli strain (AK1), isolated from sewage water of a North Indian hospital. Genome Announcements 5: e01366-17.
  • Khandal H, Parween S, Roy R, Meena MK, Chattopadhyay D. (2017) MicroRNA profiling provides insights into post-transcriptional regulation of gene expression in chickpea root apex under salinity and water deficiency. Scientific Reports. 7:4632
  • Kumar A and Sarkar AK (2017) Apple CALCINEURIN B-LIKE PROTEIN10 genes have evolved to be novel targets of miR167s through sequence variation. Current Science 112 : 147-150.
  • Kumar M, Singhal A, Verma PK and Thakur IS (2017) Production and characterization of polyhydroxyalkanoate from lignin derivatives by Pandoraea sp. ISTKB. ACS Omega 2: 9156-9163.
  • Kumar P, Augustine R, Singh AK and Bisht NC (2017) Feeding behaviour of generalist pests on Brassica juncea: implication for manipulation of glucosinolate biosynthesis pathway for enhanced resistance.Plant, Cell & Environment 40: 2109 - 2120.
  • Kumar R, Barman A, Phukan T, Kabyashree K, Singh N, Jha G, Sonti RV, Genin S and Ray RK (2017) Ralstonia solanacearum virulence in tomato seedlings inoculated by leaf clipping. Plant Pathology 66: 835-841.
  • Kumar R, Sharma A, Chandel I and Bisht NC (2017) Pattern of expression and interaction specificity of multiple G-protein beta (Gβ) subunit isoforms with their potential target proteins reveal functional dominance of BjuGβ1 in the allotetraploid Brassica juncea. Plant Physiology and Biochemistry 118: 22-30.
  • Kumar S, Kumari R, Pandey R and Sharma V (2017) Ebola virus disease: Biology, diagnosis, treatment and prevention of epidemics. Proceedings of the Indian National Science Academy 83: 103-149.
  • Kumari A and Gupta KJ (2017) VisiSens technique to measure internal oxygen and respiration in barley roots. Methods in Molecular Biology 1670: 39-45.
  • Kumari A, Preston GM and Gupta KJ (2017) Measurement of oxygen status in Arabidopsis leaves undergoing the hypersensitive response during Pseudomonas infection. Methods in Molecular Biology 1670: 71-76.
  • Kushwah S and Laxmi A (2017) The interaction between glucose and cytokinin signaling in controlling Arabidopsis thaliana seedling root growth and development. Plant Signaling & Behavior 12: e1312241.
  • Lande NV, Subba P, Barua P, Gayen D, Keshava Prasad TS, Chakraborty S and Chakraborty N (2017) Dissecting the chloroplast proteome of chickpea (Cicer arietinum L.) provides new insights into classical and non-classical functions. Journal of Proteomics 165: 11-20.
  • Lee S, Senthil-Kumar M, Kang M, Rojas CM, Tang Y, Oh S, Choudhury SR, Lee HK, Ishiga Y, Allen RD, Pandey S and Mysore KS (2017) The small GTPase, nucleolar GTP-binding protein 1 (NOG1), has a novel role in plant innate immunity. Scientific Reports 7: 9260.
  • Mahto A, Mathew IE and Agarwal P (2017) Decoding the transcriptome of rice seed during development. In: Jimenez-Lopez JC (ed), Advances in Seed Biology. InTech, Janeza Tradine, Croatia, pp 25-44.
  • Majee M, Wu S, Salaita L, Gingerich D, Dirk LMA, Chappell J, Hunt AG, Vierstra R and Downie AB (2017) A misannotated locus positively influencing Arabidopsis seed germination is deconvoluted using multiple methods, including surrogate splicing. Plant Gene 10: 74-85.
  • Malik N, Agarwal P and Tyagi A (2017) Emerging functions of multi-protein complex Mediator with special emphasis on plants. Critical Reviews in Biochemistry and Molecular Biology (In Press).
  • Mallik B, Dwivedi MK, Mushtaq Z, Kumari M, Verma PK and Kumar V (2017) Regulation of neuromuscular junction organization by Rab2 and its effector ICA69 in Drosophila. Development 144: 2032-2044.
  • Mehra P, Pandey BK and Giri J (2017) Improvement of phosphate acquisition and utilization by a secretory purple acid phosphatase (OsPAP21b) in rice. Plant Biotechnology Journal 15: 1054-1067.
  • Mishra BS, Jamsheer K M, Singh D, Sharma M and Laxmi A (2017) Genome-wide identification and expression, protein-protein interaction and evolutionary analysis of the seed plant-specific BIG GRAIN and BIG GRAIN LIKE gene family. Frontiers in Plant Science 8: 1812.
  • Mishra D, Shekhar S, Agrawal L, Chakraborty S and Chakraborty N (2017) Cultivar-specific high temperature stress responses in bread wheat (Triticum aestivum L.) associated with physicochemical traits and defense pathways. Food Chemistry 221: 1077-1087.
  • Mishra P, Wardhan V, Pandey A, Chakraborty S, Garg G and Chakraborty N (2017) Comparative analysis of sequence-structure function relationship of the SUN-domain protein CaSUN1. Journal of Phylogenetics Evolutionary Biology 5: 189.
  • Mtunguja MK, Ranjan A, Laswai HS, Muzanila Y, Ndunguru J and Sinha NR (2017) Genetic diversity of farmer-preferred cassava landraces in Tanzania based on morphological descriptors and single nucleotide polymorphisms. Plant Genetic Resources 15: 138-146.
  • Mur LAJ, Simpson C, Kumari A, Gupta AK and Gupta KJ (2017) Moving nitrogen to the centre of plant defence against pathogens. Ann. Bot. 119: 703-709.
  • Muthamilarasan M and Prasad M (2017) Exploiting genome sequence information to develop genomic resources for foxtail millet improvement. In: Prasad M (ed), The Foxtail Millet Genome. Springer International Publishing, Switzerland, pp 37-51.
  • Muthamilarasan M and Prasad M (2017) Genetic determinants of drought stress tolerance in Setaria. In: Doust A, Diao X (eds), Genetics and Genomics of Setaria. Springer International Publishing, Switzerland, pp 267-289.
  • Muthamilarasan M, Shweta S and Prasad M (2017) Foxtail millet genome sequencing, assembly, annotation, and application. In: Prasad M (ed), The Foxtail Millet Genome. Springer International Publishing, Switzerland, pp 11-22.
  • Nag P, Aggarwal PR, Ghosh S, Narula K, Tayal R, Maheshwari N, Chakraborty N and Chakraborty S (2017) Interplay of neuronal and non-neuronal genes regulates intestinal DAF-16-mediated immune response during Fusarium infection of Caenorhabditis elegans. Cell Death Discovery 3: 17073.
  • Negi B, Salvi P, Bhatt D, Majee M and Arora S (2017) Molecular cloning, in-silico characterization and functional validation of monodehydroascorbate reductase gene in Eleusine coracana. PLoS One 12: e0187793.
  • Nivedita, Verma PK and Upadhyaya KC (2017) Lectin protein kinase is induced in plant roots in response to the endophytic fungus, Piriformospora indica. Plant Molecular Biology Reporter 35: 323-332.
  • Pandey BK, Mehra P, Verma L, Bhadouria J and Giri J (2017) OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation. Plant Physiology 174: 2316-2332.
  • Pandey C, Augustine R, Panthri M, Zia I, Bisht NC and Gupta M (2017) Arsenic affects the production of glucosinolate, thiol and phytochemical compounds: A comparison of two Brassica cultivars. Plant Physiology and Biochemistry 111: 144-154.
  • Pandey G, Yadav CB, Sahu PP, Muthamilarasan M and Prasad M (2017) Salinity induced differential methylation patterns in contrasting cultivars of foxtail millet (Setaria italica L.). Plant Cell Reports 36: 759-772.
  • Pandey P and Senthil-Kumar M (2017) Plant responses to combined drought and pathogen infection: current understanding on the role of phytohormones. In: Senthil-Kumar M (ed), Plant Tolerance to Individual and Concurrent Stresses, Springer (India) Pvt. Ltd. pp 133 -149.
  • Pandey P, Irulappan VM, Bagavathiannan MV and Senthil-Kumar M (2017) Impact of combined abiotic and biotic stresses on plant growth and avenues for crop improvement by exploiting physio-morphological traits. Front. Plant Sc. 8: 537.
  • Pandey S, Kumari A, Bharadwaj C and Gupta KJ (2017) Measurement of respiration and internal oxygen in germinating Cicer arietinum L. seeds using optic microsensor. Methods in Molecular Biology 1670: 57-62.
  • Pandey S, Kumari A and Gupta KJ (2017) Isolation of physiologically active and intact mitochondria from chickpea. Methods in Molecular Biology 1670: 77-85.
  • Parida SK, Srivastava R and Bajaj D (2017) A genome-wide mQTL-seq scan identifies potential molecular signatures regulating plant height in chickpea. Plant Mol. Biol. Rep. 35: 273-286.
  • Pathak PK and Gupta KJ (2017) Using an oxygen microsensor to measure oxygen dynamics in tomato plants in response to Pseudomonas syringae infection. Methods in Molecular Biology 1670: 63-69.
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  • Trivedi DK, Srivastava A, Verma PK, Tuteja N and Gill SS (2016) Piriformospora indica: a friend in need is a friend in deed. J. Bot. Sci. 5: 16-19.
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  • Jain M (2009) Genome-wide identification of novel internal control genes for normalization of gene-expression during various stages of development in rice. Plant Science 176: 702-706.
  • Jain M and Khurana JP (2009) Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice. FEBS Journal 276: 3148-3162.
  • Kathuria H, Giri J, Nataraja KN, Murata N, Udayakumar M and Tyagi AK (2009) Glycinebetine-Induced water-stress tolerance in Cod A-expressing transgenic India rice is associated with up-regulation of several stress responsive genes. Plant Biotechnol. Journal 7: 512-526.
  • Kumar S, Mishra RK, Kumar A, Srivastava S and Chaudhary S (2009) Regulation of stipule development by COCHLEATA and STIPULE-REDUCED genes in pea Pisum sativum. Planta 230: 449-458.
  • Mallavarupu GR, Mishra RK, Chaudhary S, Pandey R, Gupta S, Kumar S, Kaul VK and Pathania V (2009) 2-Hydroxyacetophenone, the main component of the essential oil of the roots of Carissa opaca Stapf ex Haines. Journal of Essential Oil Research 21: 385-387.
  • Mishra BS, Singh M, Aggrawal P and Laxmi A (2009) Glucose and auxin signaling interaction in controlling Arabidopsis thaliana seedlings root growth and development. PLoS One 4: e4502.
  • Mishra RK, Chaudhary S, Kumar A and Kumar S (2009) Effects of MULTIFOLIATE-PINNA, AFILA, TENDRIL-LESS and UNIFOLIATA genes on leafblade architecture in Pisum sativum. Planta 230: 177-190.
  • Mishra RK, Kumar A, Chaudhary S and Kumar S (2009) Mapping of the multifoliate pinna (mfp) leaf-blade morphology mutation in grain pea Pisum sativum. J. Genet. 88: 227-232.
  • Mohan A, Kulwal P, Singh R, Kumar V, Mir RR, Kumar J, Prasad M, Balyan HS and Gupta PK (2009) Genome-wide QTL analysis for pre-harvest sprouting tolerance in bread wheat. Euphytica 168: 319-329.
  • Mueller LA, Lankhorst RK, Tanksley SD, Giovannoni JJ, White R, Vrebalov J, Fei Z, Van Eck J, Buels R, Mills AA, Menda N, Tecle IY, Bombarely A, Stack S, Royer SM, Chang SB, Shearer LA, Kim BD, Jo SH, Hur CG, Choi D, Li CB, Zhao J, Jiang H, Geng Y, Dai Y, Fan H, Chen J, Lu F, Shi J, Sun S, Yang X, Lu C, Chen M, Cheng Z, Li C, Ling H, Xue Y, Wang Y, Seymour GB, Bishop GJ, Bryan G, Rogers J, Sims S, Butcher S, Buchan D, Abbott J, Beasley H, Nicholson C, Riddle C, Humphray S, McLaren K, Mathur S, Vyas S, Solanke AU, Kumar R, Gupta V, Sharma AK, Khurana P, Khurana JP, Tyagi A, Chowdhury P, Shridhar S, Chattopadhyay D, Pandit A, Singh P, Kumar A, Dixit R, Singh A, Praveen S, Dalal V, Yadav M, Ghazi IA, Gaikwad K, Sharma TR, Mohapatra T, Singh NK, Szinay D, De Jong H, Peters S, Van Staveren M, Datema E, Fiers MWEJ, Van Ham RCHJ, Lindhout P, Philippot M, Frasse P, Regad F, Zouine M, Bouzayen M, Asamizu E, Sato S, Fukuoka H, Tabata S, Shibata D, Botella MA, Perez-Alonso M, Fernandez-Pedrosa V, Osorio S, Mico A, Granell A, Zhang Z, He J, Huang S, Du Y, Qu D, Liu L, Liu D, Wang J, Ye Z, Yang W, Wang G, Vezzi A, Todesco S, Valle G, Falcone G, Pietrella M, Giuliano G, Grandillo S, Traini A, D'Agostino N, Chiusano ML, Ercolano M, Barone A, Frusciante L, Schoof H, Jocker A, Bruggmann R, Spannagl M, Mayer KXF, Guigo R, Camara F, Rombauts S, Fawcett JA, Van De Peer Y, Knapp S, Zamir D, Stiekema W (2009) The Tomato Genome Sequencing Consortium. A snapshot of the emerging tomato genome sequence. The Plant Genome 2: 78-92.
  • Nayak SN, Balaji J, Upadhyay HD, Hash CT, KaviKishore PB, Chattopadhyay D, Rodrigues LM, Blair MW, Baum M, McNally K, This D, Hosington D and Varshney R (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science 177: 460-467.
  • Rao KP, Vani G, Kumar K and Sinha AK (2009) Rhythmic expression of mitogen activated protein kinase activity in rice. Molecules and Cells 28: 417-422.
  • Saini V, Raghuvanshi S, Talwar GP, Ahmed N, Khurana JP, Hasnain SE, Tyagi Akhilesh K and Tyagi Anil K (2009) Polyphasic taxonomic analysis establishes Mycobacterium indicus pranii as a distinct species. PLoS One 4: e6263.
  • Shridhar S, Chattopadhyay D and Yadav G (2009) PLecDom: A program for identification and analysis of plant lectin domains. Nucl. Acids. Res. 37: W452-458.
  • Shukla RK, Tripathi V, Jain D, Yadav RK and Chattopadhyay D (2009) CAP2 enhances germination of transgenic tobacco seeds at high temperature and promotes heat stress tolerance in yeast. FEBS J. 276: 5252-5262.
  • Solanke AU, Sharma MK, Tyagi AK and Sharma AK (2009) Characterization and phylogenetic analysis of environmental stress responsive SAP gene family encoding A20/AN1 zinc-finger proteins in tomato. Mol. Genet. Genomics 282: 153-164.
  • Tripathi V, Parasuraman B, Laxmi A and Chattopadhyay D (2009) CIPK6, a CBL-interacting protein kinase is required for development and salt tolerance in plant. Plant Journal 58: 778-790.
  • Tripathi V, Syed N, Laxmi A and Chattopadhyay D (2009) Role of CIPK6 in root growth and auxin transport. Plant. Signal. Behav. 4: 663-665
  • Yadav G, Ghokhale RS and Mohanty D (2009) Towards prediction of metabolic products of polyketide synthases: An in silico analysis. PLoS Comp. Biol. 5: e1000351.
  • Yadav G, Prasad BLA, Jha BK, Rai V, Bhakuni VK and Datta K (2009) Evidence for inhibitory interaction of hyaluronan binding protein 1 with S. pneumoniae hyaluronidase. J. Biol. Chem. 284: 3897-3905.
  • Yadav RK, Shukla RK and Chattopadhyay D (2009) Soybean cultivar resistant to mungbean yellow mosaic India virus infection induces viral RNA degradation earlier than the susceptible cultivar. Virus Res. 144: 89-95.

  • Agrawal L, Chakraborty S, Jaiswal DK, Gupta S, Datta A and Chakraborty N (2008) Comparative proteomics of tuber induction, development and maturation reveal the complexity of tuberization process in potato (Solanum tuberosum L.). J. Proteome Res. 7: 3803-3817.
  • Bhatia S, Gangappa SN, and Chattopadhyay S (2008) SHW1, a common regulator of abscisic acid (ABA) and light signaing pathways. Plant Signal. Behav. 10: 862-864.
  • Bhatia S, Gangappa SN, Kushwaha R, Kundu S and Chattopadhyay S (2008) SHORT HYPOCOTYL IN WHITE LIGHT1, a serine-arginine-aspartate rich protein in Arabidopsis, acts as a negative regulator of photomorphogenic growth. Plant Physiol. 147: 169-178.
  • Chakraborty S, Pandey A, Datta A and Chakraborty N (2008) Nucleus. In: Agrawal GK, Rakwal R (eds) Plant Proteomics : Technology, Strategies and Applications, John Wiley & Sons, Inc., New Jersey, USA, pp 327-338.
  • Chopra T, Banerjee S, Gupta S, Yadav G, Anand S, et al. (2008) Novel Intermolecular Iterative Mechanism for Biosynthesis of Mycoketide Catalyzed by a Bimodular Polyketide Synthase. PLoS Biol. 6: e163.
  • Goel D, Mallavarupu GR, Kumar S, Singh V and Ali V (2008) Volatile metabolite compositions of the essential oil from aerial parts of ornamental and artemisinin rich cultivars of Artemisia annua. Journal of Essential Oil Research 20: 1-6.
  • Hofmann MG, Sinha AK, Proels RK and Roitsch T (2008) Cloning and characterization of a novel LpWRKY1 transcription factor in tomato. Plant Physiology and Biochemistry 46: 533-540.
  • Jain M, Khurana JP (2008). Small RNA regulation of rice homeobox genes. Plant Signal. Behav. 3: 1024-1025.
  • Jain N, Shasany AK, Singh S, Khanuja SPS and Kumar S (2008) SCAR markers for correct identification of Phyllanthus amarus, P. fraternus, P. debilis and P. urinaria used in scientific investigations and dry leaf bulk herb trade. Planta Medica 74: 296-301.
  • Jayaraman A, Puranik S, Rai NK, Vidapu S, Sahu PP, Lata C and Prasad M (2008) cDNA-AFLP analysis reveals differential gene expression in response to salt stress in foxtail millet (Setaria italica L.). Mol. Biotechnol. 40: 241-251.
  • Kaur H, Shukla RK, Yadav G, Chattopadhyay D and Majee M (2008) Two divergent genes encoding L-myo-inositol 1-phosphate synthase1 (CaMIPS1) and 2 (CaMIPS2) are differentially expressed in chickpea. Plant, Cell and Environment 31: 1701-1716.
  • Kota R, Varshney RK, Prasad M, Zhang H, Stein B, Graner A (2008) EST-derived single nucleotide polymorphism markers for assembling genetic and physical map of the barley genome. Functional & Integrative Genomics 8: 223-233.
  • Kumar K, Rao KP, Sharma P and Sinha AK (2008) Differential regulation of rice mitogen activated protein kinase kinase (MKK) by abiotic stress. Plant Physiology and Biochemistry 46: 891-897.
  • Kushwaha R, Singh A, Chattopadhyay S (2008) Calmodulin 7 plays an important role as transcriptional regulator in Arabidopsis seedling development. Plant Cell 20: 1747-1759.
  • Laxmi A, Pan J, Morsy M and Chen R (2008) Light plays an essential role in intracellular distribution of auxin efflux carrier PIN2 in Arabidopsis thaliana. PLoS ONE 3: e1510.
  • Mallappa C, Singh A, Ramu H, Chattopadhyay S (2008) GBF 1, a transcription factor of blue light signaling in Arabidopsis, is degraded in the dark by a proteasome - mediated pathway independent of COP 1 and SPA 1. J. Biol. Chem. 19: 35772-35782.
  • Mishra RK, Chaudhary S, Gupta S, Mallavarupu GR and Kumar S (2008) Volatile metabolite components of Catharanthus roseus root. Journal of Medicinal and Aromatic Plant Science 30: 69-72.
  • Pandey A, Chakraborty S, Datta A and Chakraborty N (2008) Proteomics approach to identify dehydration responsive nuclear proteins from chickpea (Cicer arietinum L.). Mol. Cell. Proteomics 7: 88-107.
  • Panjabi P, Jagannath A, Bisht NC, Padmaja L, Sharma S, Gupta V, Pradhan AK and Pental D (2008) Comparative mapping of Brassica juncea and Arabidopsis thaliana using intron polymorphism (IP) markers: homeologous relationships, diversification and evolution of the A, B and C Brassica genomes. BMC Genomics 9: 113.
  • Saxena G, Rahman LU, Verma PC, Banerjee S and Kumar S (2008) Field performance of somaclones of rose scented geranium (Pelargonium graveolens L' Her Ex Ait.) for evaluation of their essential oil yield and composition. Industrial Crops and products 27: 86-90.
  • Saxena G, Verma PC, Rahman LU, Banerjee S, Shukla RS and Kumar S (2008) Selection of leaf blight resistant Pelargonium graveolens plants regenerated from callus resistant to culture filterate of Alternaria. Alternate Crop Protection 27: 558-565.
  • Sharma K, Agrawal V, Gupta S, Kumar R and Prasad M (2008) ISSR marker assisted selection of male and female plants in a promising dioecious crop-Jojoba (Simmondsia chinensis), Plant Biotechnology Reports 2: 239-243.
  • Shen H, Zhu L, Castillon L, Majee M, Downie B and Haq E (2008) Light-induced phosphorylation and degradation of the negative regulator PIF1 depends upon its direct physical interactions with photoactivated phytochromes. Plant Cell 20: 1586-1602.
  • Singh A, Singh IK and Verma PK (2008) Differential Transcript Accumulation in Cicer arietinum L. in Response to a Chewing Insect Helicoverpa armigera and Defense Regulators Correlate with Reduced Insect Performance. J. Exp. Bot. 59: 2379-2392.
  • Singh D, Rai SK, Rai SP, Srivastava S, Mishra RK, Chaudhary S, Sharma S and Kumar S (2008) Predominance of the serpentine route in monoterpenoid indole alkaloid pathway of Catharanthus roseus. Proc. Ind. Natl. Sci. Acad. 74: 97-109.

  • Agrawal V, Sharma K, Gupta S, Kumar R and Prasad M (2007) Identification of sex in Simmondsia chinensis (Jojoba) using RAPD markers. Plant Biotechnology Reports 1: 207-210.
  • Berger S, Sinha AK and Roitsch T (2007) Plant physiology meets phytopathology: relations between plant primary metabolism and plant-pathogen-interactions. J. Exp. Bot 58: 4019-4026.
  • Bhushan D, Pandey A, Choudhary MK, Datta A, Chakraborty S and Chakraborty N (2007) Comparative proteomics analysis of differentially expressed proteins in chickpea extracellular matrix during dehydration stress. Mol. Cell. Proteomics 6: 1868 -1884.
  • Biswas S, Van Dijck P, Datta A. (2007) Environmental sensing and signal transduction pathways regulating morphopathogenic detrminants of Candida albicans. Microbiol Mol. Biol. Reviews 71: 348-376.
  • Dutta A, Sen J and Deswal R (2007) Downregulation of terpenoid indole alkaloid biosynthetic pathway by low temperature and cloning of a AP2 type C-repeat binding factor (CBF) from Catharanthus roseus (L). G. Don. Plant Cell Reports 26: 1869-1878.
  • Dutta A, Singh D, Kumar S and Sen J (2007) Transcript profiling of terpenoid indole alkaloid pathway genes and regulators reveals strong expression of repressors in Catharanthus roseus cell cultures. Plant Cell Reports 26: 907-15.
  • Goel D, Goel R, Singh V, Ali M, Mallavarupu GR and Kumar S (2007) Composition of the essential oil from the roots of Artemisia annua. Journal of Natural Medicines 61: 458-461.
  • Gupta S, Pandey-Rai S, Srivastava S, Naithani SC, Prasad M and Kumar S (2007) Construction of primary genetic linkage map of medicinal plant Catharanthus roseus. J. Genet. 86: 259-268.
  • Kumar S (2007) Mechanisms of heritable epigenetic variation mediated by cytosine methylation of nuclear genome in plants. Proc. Natl. Acad. Sci. India 77B: 19-30.
  • Kumar S (2007) Tomato crop as a weed. Current Science 93: 747.
  • Kumar S (2007) Taxonomy, the legacy of Linnaeus, transformed to phylogenomics. Current Science 92: 1475.
  • Kumar S (2007) Conventional and new concepts of species and genetic mechanisms for the origin of species. Proc. Ind. Natl. Sci. Acad. 73: 111-120.
  • Kumar S, Datta A, Sinha AK and Sen J (2007) Cloning, characterization and localization of a novel basic peroxidase gene from Catharanthus roseus. FEBS Journal 274: 1290-1303.
  • Kumar S, Pandey-Rai S and Rai SK (2007) The cultivation of mints in India. In Mint: The Genus Mentha, Lawrence BM (Ed), CRC Press, Boca Raton 137-164.
  • Kumar S and Prasad M (2007) Crop breeding prospects in the genomics era. Journal of New Seeds 8: 29-49.
  • Shokeen B, Sethy NK, Kumar S and Bhatia S (2007) Isolation and characterization of microsatellite markers for analysis of molecular variation in the medicinal plant Madagascar periwinkle (Catharanthus roseus (L.) G. Don.). Plant Science 172: 441-451.
  • Stein N, Prasad M, Scholz U, Thiel T, Zhang H, Wolf M, Kota R, Varshney RK, Perovich D, Grosse I and Graner A (2007). A 1000 loci transcript map of the barley genome - new anchoring points for integrative grass genomics. Theor. Appl. Genet. 114: 823-839.
  • Varshney RK, Hoisington DA, Upadhyaya HD, Gaur PM, Nigam SN, Saxena K, Vadez V, Sethy NK, Bhatia S, Aruna R, Gowda MVC and Singh NK (2007) Molecular genetics and breeding of grain legume crops for the semi-arid tropics. In Springer publication: Genomic Assisted Crop Improvement: Vol 2: Genomics Applications in Crops; R. Varshney and R. Tuberosa (eds.) pp. 207-241.

  • Bhushan D, Pandey A, Chattopadhyay A, Choudhary MK, Chakraborty S, Datta A and Chakraborty N (2006) Extracellular matrix proteome of chickpea (Cicer arietinum) illustrates pathway abundance, novel protein functions and evolutionary perspect. J. Proteome Res. 5: 1711-1720.
  • Choudhary S, Sethy NK, Shokeen B and Bhatia S (2006) Development of sequence-tagged microsatellite site markers for chickpea (Cicer arietinum L.). Mol. Ecology Notes 6: 93-95.
  • Goel D, Singh V, Ali M, Mallavarupu GR and Kumar S (2006) Essential oils of petal, leaf and stem of the antimalarial plant Artemisia annua. Journal of Natural Medicine 61: 187-191.
  • Kumar S (2006) Apomixis revisited. Current Science 90: 277-278.
  • Kumar S (2006) Progress in understanding of the genetic phenomenon paramutation. Current Science 91: 1002-1004.
  • Kumar S (2006) Climate change and crop breeding objectives in the twenty first century. Current Science 90: 1053-1054.
  • Kumar S, Chattopadhyaya D and Prasad M (2006): Criteria for the choice of plant species for genome sequencing, to advance plant biology and agriculture. Current Science 91:569-570.
  • Kumar S and Prasad M (2006) Crop breeding prospects in the genomic era. Journal of New Seeds 8: 29-49.
  • Mallappa C, Yadav V, Negi P and Chattopadhyay S (2006) A basic Leucine Zipper Transcription Factor, G-box-binding Factor 1, Regulates Blue Light-mediated Photomorphogenic Growth in Arabidopsis. J. Biol. Chem. 281: 22190-22199.
  • Pandey A, Choudhary MK, Bhushan D, Chattopadhyay A, Chakraborty S, Datta A and Chakraborty N (2006) The Nuclear Proteome of Chickpea (Cicer arietinum L.) reveals predicted and unexpected proteins. J. Proteome Res. 5: 3301-3311.
  • Pandey-Rai S, Mallavarupu GR, Naqvi AA, Yadav A, Rai SK, Srivastava S, Singh D, Mishra R and Kumar S (2006) Volatile compounds of leaves and flowers of periwinkle Catharanthus roseus (L.) G. Don from New Delhi. Flavour and Fragnance Journal 21: 427-430.
  • Sethy NK, Shokeen B, Edwards KJ and Bhatia S (2006) Development of microsatellite markers and analysis of intraspecific genetic variability in chickpea (Cicer arietinum L.). Theor. Appl. Genet. 112: 1416-1428.
  • Sethy NK, Choudhary S, Shokeen B and Bhatia S (2006) Identification of microsatellite markers from Cicer reticulatum: molecular variation and phylogenetic analysis. Theor. Appl. Genet. 112: 347-357.
  • Shukla RK, Raha S, Tripathi V and Chattopadhyay D (2006) Expression of CAP2, an AP2-family transcription factor from Chickpea enhances growth and tolerance to dehydration and salt tress in transgenic tobacco. Plant Physiol. 142:113-123

  • Dutta A, Batra J, Pandey-Rai S, Singh D, Kumar S and Sen J (2005) Expression of terpenoid indole alkaloid biosynthetic pathway genes corresponds to accumulation of related alkaloids in Catharanthus roseus (L.) G. Don. Planta 220: 376-383.
  • Hettiarachchi GHCM, Reddy MK, Sopory SK and Chattopadhyay S (2005) Regulation of TOP2 by Various Abiotic Stresses Including Cold and Salinity in Pea and Transgenic Tobacco Plants. Plant and Cell Physiology 46: 1154-1160.
  • Kumar S (2005) Prospects for sustainable production of the antimalarial molecule artemisinin in India. National Academy of Science Letters 28: 325-338.
  • Kumar S and Srivastava S (2005) Establishment of artemisinin combination therapy as first line treatment for combating malaria: Artemisia annua cultivation in India needed for providing sustainable supply chain of artemisinin . Current Science 89: 1097-1102.
  • Mueller LA, Tanksley SD, Giovannoni JJ, Van Eck J, Stack S, Choi D, Kim BD, Chen M, Cheng Z, Li C, Ling H, Xue Y, Seymour G, Bishop G, Bryan G, Sharma R, Khurana J, Tyagi A, Chattopadhyay D, Singh NK, Stiekema W, Lindhout P, Jesse T, Lankhorst RK, Bouzayen M, Shibata D, Tabata S, Granell A, Botella MA, Giuliano G, Frusciante L, Causse M and Zamir D (2005) The tomato sequencing project, the first cornerstone of the international Solanaceae project (SOL). Comparative and Functional Genomics 6: 153-158.
  • Shokeen B, Sethy NK, Choudhary S and Bhatia S (2005) Development of STMS markers from the medicinal plant Madagascar periwinkle (Catharanthus roseus L.) G. Don. Mol. Ecology Notes 5: 818-820.
  • Yadav V, Chandrashekara M, Sreeramaiah NG, Bhatia S and Chattopadhyay S (2005) A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of of blue light-mediate photomorphogenic growth. Plant Cell 17: 1953-1966.

  • Azam M, Kesarwani M, Chakraborty S, Natarajan K and Datta A (2002) Cloning and characterization of 5'-flanking region of oxalate decarboxylase gene from Flammulina velutipes. Biochemical J. 367: 66-75.
  • Bajpai S, Gupta AP, Gupta MM, and Kumar S (2002) Inter-relationships between morphine and codeine in the Indian genetic resources of opium poppy Papaver Somniferum. Journal of Herbs, Spokes and Medicinal Plants 8: 75-81.
  • Chakraborty S, Chakraborty N, Jain D, Salunke DM and Datta A (2002) Active site geometry of oxalate decarboxylase from Flammulina velutipes: Role of histidine coordinated manganese in substrate recognition. Protein Sci. 11: 2138-2147.
  • Chakraborty S, Sarmah B, Chakraborty N and Datta A (2002) Premature termination of RNA polymerase II mediated transcription of a seed protein gene in Schizosaccharomyces pombe. Nucl. Acids Res. 30: 2940-2949.
  • Prajapati S, Bajpai S, Singh D, Luthra R, Gupta MM and Kumar S (2002) Alkaloid profiles of the Indian land races of the opium poppy Papaver somniferum L. Genetic Resources and Crop Evolution 49: 158-180.
  • Sarmah B, Chakraborty N, Chakraborty S and Dutta A (2002) Plant pre-mRNA splicing in fission yeast, Schizosaccharomyces pombe. Biochem. Biophy. Res. Comm. 293: 1209-1216.
  • Sen J, Kalia S and Guha-Mukherjee S (2002) Level of endogenous free amino acids during various stages of culture of Vigna mungo (L.) Hepper - somatic embryogenesis, organogenesis and plant regeneration. Current Science 82: 429-433.
  • Thakur IS, Verma PK and Upadhyaya KC (2002) Molecular cloning and characterization of pentachlorophenol-degrading monooxygenase genes of Pseudomonas sp. from the chemostat. Biochem. Biophy. Res. Comm. 290: 770-774.
  • Yadav V, Kundu S, Chattopadhyay D, Negi P, Wei N, Deng XW and Chattopadhyay S (2002) Light regulated modulation of Z-box containing promoters by photoreceptor and downstream regulatory components, COP1 and HY5 in Arabidopsis thaliana. Plant Journal 31: 741-753.