With the advancement of high-throughput genotyping services (RAD-seq/Array chip etc.) now producing millions of high-quality reads per run or several thousands of genotyping loci in hundreds or thousands of samples in just few hours or day. working with these much huge data has become a significant obstacle for many researchers. At NGGF, we have staff of dedicated bioinformaticians with extensive experience in genomics and genotyping data analysis overcoming these and a variety of other challenges that researchers face every day. We offer the following genotyping data analysis services:

• High quality SNP identification via Reference/de-novo method (RAD-seq, re-sequencing data)
• Genome wide SSR identification and highly specific primer designing (Genome/Transcriptome)
• Conversion of QTL to KASP marker
• Designing and development of custom high throughput (low/high density) Affymetrix SNP array chip for new species
• Linkage map construction
• QTL Identification
• Genome wide association analysis (GWAS)
• In-silico SNP/SSR marker identification for marker assisted selection (MAS)
• Haplotype analysis
• Structure and diversity
• Development and assistance with experimental design