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RESULT: VISUALIZATION AND ANALYSIS
I. NETWORK VISUALIZATION
FOR GRAPHICAL REPRESENTATION OF NETWORK AND ITS PROPERTIES
II. SIMULATE SINGLE PERTURBATION
VIEW EFFECT OF
INTERACTION LOSS
RANDOM LOSS
PROTEIN LOSS
ON
ACTB
ACTG1
ACTN4
ADRB2
AGAP2
AKAP5
AMPH
AP2M1
APBA1
APBA2
ARRB2
ATP2B2
ATP2B4
BAD
BAIAP2
CABP1
CABP2
CABP5
CACNB1
CAMK2A
CAMK2G
CAR1
CASK
CASKIN1
CAV1
CAV3
CD4
CDK5
CDKN1B
CIB1
CLIC4
CLIP2
CLTC
CNKSR3
CRIPT
CTTN
CYLD
DLG1
DLG2
DLG3
DLG4
DLGAP1
DLGAP2
DLGAP3
DNAJB1
DNAJC3
DNM1
DNM2
DNM3
DYNC1H1
DYNLL1
EIF4EBP1
ENAH
EPN1
EPN2
EPS15
EPS8L1
FCHO1
FEZ1
FKBP1A
FLNA
GABARAP
GABRG1
GABRG2
GABRR3
GAPDH
GLRB
GLUD1
GLUL
GM2A
GPHN
GRB2
GRIA1
GRIK1
GRIN2A
GRIN2B
GRIN2D
GRIN3A
GRM5
GRM7
GRM8
HOMER1
HOMER2
HSP90AA1
HSPA4
HSPA8
ITGB2
ITPR1
KCNA2
KCNA4
KCNAB1
KCNAB2
LAMA3
LDHA
LIN7B
LOC499110
LPHN1
LRRC7
MAGI2
MAP1LC3B
MAP2K1
MAPKAPK2
MASTL
MDH1
MLLT10
MPP3
MTA1
MTOR
MTR
NCALD
NEDD4
NEFL
NOS1
NRXN1
NRXN2
NRXN3
NTRK1
P2RX7
PARD3
PARK2
PEX5
PFKM
PFKP
PFN1
PFN2
PLD1
PLD2
PLK2
PLK3
PRKCA
PRKCE
PRKCG
PRKCZ
PSMA4
PTPRZ1
RAC1
RAF1
REN
SGIP1
SHANK1
SHANK2
SHANK3
SKP2
SLC40A1
SLC6A3
SNAP25
SNCA
SNTA1
SORBS2
SQSTM1
SSTR2
STAT3
STX17
STX1A
STX1B
STX2
STX3
STX4
STX5
STXBP1
SUMO1
SVIL
SYNJ1
TH
TSC1
TSC2
TUBA1A
TUBB2B
UBC
UBE2K
VIM
VPS11
VPS16
VPS18
VPS33A
YWHAB
YWHAE
YWHAZ
ZBTB16
:-
III. SIMULATE CLUSTERED PERTURBATIONS
SELECT
Two
Five
Seven
Nine
PROTEINS FROM NETWORK BASED ON
USER SELECTION
Lowest Connectivity
Highest Connectivity
:-
IV. SIMULATE SEQUENTIAL PERTURBATIONS
RUN EXTINCTION SERIES BASED ON
Lowest To Highest
Highest To Lowest
Random
NUMBER OF PROTEIN INTERACTIONS :-
National Institute of Plant Genome Research